Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1076 ATGGATGACCATCGCAAGCACCAGGTCTCGTTGAGGGGAGCTAGCGCCAAAGAAATTACCAGGGATGCCCTTTTGGAGAAGGTTTCTCAAGAAAGAGAGCTCCGCAATTATGTGAGGCGGGCCACGGCTGCCGCAATCTTCATCCAGAGAGTCTGGAGACGCTACAATGTGATAAAGATGGTAGCTGTGCAACTTCAAGAAGAATGGGAAACATTGGTGAATCATCATGCTGTGTTGATGACCAGAACATGGATTTCCAGTAGTTTCTTGAGACCTTTTCTTTTCTTTATTACATATCTGTCAATTCGACATCAGAGGATTCGTACCAGGGATGTAGACTGCATTCGGCATTGCTTCAAAACTCTATTGGAAAGCATAAACTCAACTGATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAAGGATATGGACTTATGAAGCAGAGAAACTGATTTCTATATGCTTATTTATTCTTGCGGAGTGTGATACCCATCCAGGGGGTCAAGATATTAATGTCCTTTCTTCTATGGCAATGCGTCTTCTTGTTGTCTTAACTGATACAAAAGGGTGGAAGAGCATTACAGATGATAACTTTCAGGATGCAGATAGGGCAGTGAAGGATTTAGTTAGGTTTATGGGAAGTAGAAAAGGTGGTCTTTATCTTTGTATCAGAAAATATTTTAATAAATTGGATGCTCCTTGTTCTTCACTGAAGAACAGTGTTGTCCAGGCGGATGAAAGATTCTTGATAACTGCAAGTGCAATAACTTTAGCTTTGCGGCCCTTTCAGGCTGCAAACTTAGACGTCACTGAGCCTGGCCCCTTCAATGTGCAATATGCTGCCGAGCAGTATTGTGTATATATACTTACAATTCCTTGGCTTGCTCAACGTCTACCTGCAGTTCTGTTACCTGCTATGAAGCACAAGTCTATTCTATCACCTTGCTTTCAGACACTACTGATCTTGAGAAAGAAAATATTAAAGGAGATGTCAGAGATGCATCCATTCCAAATCCCTCATTGTTCCAAGGCAGTGCCACAAGTTAGTTGGGCTCTTGCAAACGTTATATGCCTAGCGACTGGAAGTGAGAATGATTGTGTGGATCAGGGACAGTTCACTCAAGGCCTAAACCACACGTCATATGTACATGTTGTTAACATCCTTGCAGAGAACTTGTTGGATTGGCTTGAGGATGTTGGATGGATAAGAAAGGATAACCAAGAAATCCAGGAAAATGTTGAAACATGTGCAAATCCCATTGACATAGCATGCAGTCCTGATACAACTTATGGACCGATAAAGATGTCATACATGGACCTTTTCCGTCCTGTTTGTCAGCAGTGGCATCTTATGAAGCTTTTGGCAATCCTGAAGAATGTTGCCTTTATTTGTGATAGTTCACTACCAAACAATCTGGAATACTCGGGGAAGCTCGAACTACTTGATATTGCATATTTTTATTCCTACATGCTTAGGATATTTTCAGTTTTGAATCCTGTAGTTGGGCCTTTGCCTGTTCTCAACATGCTAGCTTTTACTCCTGGATTTCTTGTCAATCTATGGGAGGCACTGGAAGGTTACCTTTTTCCTGGAGATGTTAAGTTTTCTGAAGATAATGATCTTTGCAAAAGCAAAATTTCTACAAACAAAAATGATGGGGCTTATGAGAAAAAGCAAAAACAGGCCTCTAGAGATGGAGGTAATAAATGGGTAACCATGCTTCAGAAGATCACAGGTAAGTCACAGATGGATGTAGATTTGATTTCTGGTCGAACTAGAACCAGCCAGGTTAAAGAAGATGCTTTTGATGTATGGGATGTAGAGCCTTTAAGGTGTGGTCCACAGGGTATTTCAAAAGATATATCATGTCTGCTTCATCTGTTCTGTGCCACCTATTCACATCTGCTGTTAGTTCTTGATGACATCGAGTTCTATGAAAAGCAGGTTCCATTCACACTGGAGCAGCAGCGAAGAATTGCATCAATGCTCAATACACTAGTGTATAATGGTTCATTCCATGGTAGTGGTGGCCAGCAGAATAGACCCCTCATGGATGCTGCAGTAAGATGCCTACATTTGTTGTATGAAAGGGATTGCAGGCATCAATTTTGCCCTCCTGGCTTGTGGCTTTCACCTGCTAGAAATAATCGGCCCCCAATTGCAGTTGCTGCCCGAACTCATGAAGTTTTGTCAGCTAAACCAGATGATGCTTTGACCATTCCAAGCATGGCTCCTGTTATCACTACGACACACGTATTCCCATTTGAAGAAAGAGTTCAGATGTTCAGAGAGTTCATCAAGATGGACAAATTCTCTCGCAAAATGGCTGGTGAAGTGGCTGGACCTGGTTCACGATCAGTTGAGGTAGTAATTCGTCGAGGTCACATTGTTGAAGATGGTTTTCAACAATTAAATTCACTTGGTTCAAGGTTAAAGTCATGCATCCACGTTTCATTTATTAGTGAATGTGGCCTTCCAGAGGCTGGTCTGGACTATGGCGGCTTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAGTATGGGTTGTTCTCTCAAACCTCAACTTCAGACAGACTCCTAGTCCCTAACACAGCTGCAAGATTTCTGGAGAACGGTACTCAGATGATTGAGTTCCTTGGAAAAGTTGTTGGCAAAGCACTCTATGAAGGAATATTATTAGATTATTCCTTTTCACATGTTTTTATACAAAAGCTATTAGGACGATATAGCTTTCTTGATGAACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAGCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAGAATCATTAGGCAAACGGCACATTATTGAGCTCAAACCTGGTGGCAAGGATGCCATTGTGACCAATGAGAACAAGTTGCAGTATGTCCATGCTATGGCAGACTATAAACTTAACCGGCAGATGCTGCCTCTATCAAATGCATTCTACAGAGGGTTGACTGATCTTATTTCACCTTCTTGGTTGAAGTTGTTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGTGGAAACCATGACATTGACATTACTGATTTAAGAAATCACACACGGTACACAGGCGGTTATACTGAGGGCAGCCGGACAGTTAAACTCTTTTGGGAGGTCATTACAGGTTTTGAACCAAAAGAACGCTGTATGCTTCTTAAATTTGTGACAAGTTGTTCTCGAGCTCCATTACTTGGATTTAAACACCTGCAGCCAACTTTTACTATTCATAAGGTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAG 3486 41.74 MDDHRKHQVSLRGASAKEITRDALLEKVSQERELRNYVRRATAAAIFIQRVWRRYNVIKMVAVQLQEEWETLVNHHAVLMTRTWISSSFLRPFLFFITYLSIRHQRIRTRDVDCIRHCFKTLLESINSTDSKMNFCSLATGTPEERRIWTYEAEKLISICLFILAECDTHPGGQDINVLSSMAMRLLVVLTDTKGWKSITDDNFQDADRAVKDLVRFMGSRKGGLYLCIRKYFNKLDAPCSSLKNSVVQADERFLITASAITLALRPFQAANLDVTEPGPFNVQYAAEQYCVYILTIPWLAQRLPAVLLPAMKHKSILSPCFQTLLILRKKILKEMSEMHPFQIPHCSKAVPQVSWALANVICLATGSENDCVDQGQFTQGLNHTSYVHVVNILAENLLDWLEDVGWIRKDNQEIQENVETCANPIDIACSPDTTYGPIKMSYMDLFRPVCQQWHLMKLLAILKNVAFICDSSLPNNLEYSGKLELLDIAYFYSYMLRIFSVLNPVVGPLPVLNMLAFTPGFLVNLWEALEGYLFPGDVKFSEDNDLCKSKISTNKNDGAYEKKQKQASRDGGNKWVTMLQKITGKSQMDVDLISGRTRTSQVKEDAFDVWDVEPLRCGPQGISKDISCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASMLNTLVYNGSFHGSGGQQNRPLMDAAVRCLHLLYERDCRHQFCPPGLWLSPARNNRPPIAVAARTHEVLSAKPDDALTIPSMAPVITTTHVFPFEERVQMFREFIKMDKFSRKMAGEVAGPGSRSVEVVIRRGHIVEDGFQQLNSLGSRLKSCIHVSFISECGLPEAGLDYGGLFKEFLTDIAKAAFAPEYGLFSQTSTSDRLLVPNTAARFLENGTQMIEFLGKVVGKALYEGILLDYSFSHVFIQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELSLDFTVTEESLGKRHIIELKPGGKDAIVTNENKLQYVHAMADYKLNRQMLPLSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNHDIDITDLRNHTRYTGGYTEGSRTVKLFWEVITGFEPKERCMLLKFVTSCSRAPLLGFKHLQPTFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLPTYKRPSTLRAKLLYAINSNAGFELS* 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18237695 18265065 + Vvi8g1076 Vvi8g1076 791299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1076 1161 SUPERFAMILY Hect, E3 ligase catalytic domain 793 1154 IPR035983 GO:0004842
Vvi8g1076 1161 Gene3D Hect, E3 ligase catalytic domain 919 998 - -
Vvi8g1076 1161 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 1161 IPR044611 GO:0000209|GO:0061630
Vvi8g1076 1161 SMART hect_3 811 1161 IPR000569 GO:0004842
Vvi8g1076 1161 Gene3D Hect, E3 ligase catalytic domain 1036 1160 - -
Vvi8g1076 1161 ProSiteProfiles HECT domain profile. 817 1161 IPR000569 GO:0004842
Vvi8g1076 1161 CDD HECTc 794 1159 IPR000569 GO:0004842
Vvi8g1076 1161 Pfam HECT-domain (ubiquitin-transferase) 848 1161 IPR000569 GO:0004842
Vvi8g1076 1161 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 1161 - -
Vvi8g1076 1161 Gene3D Hect, E3 ligase catalytic domains 795 1033 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1076 K10588 - vvi:100247661 2340.07