Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1078 ATGGAATCGCTATGCTTCTCCACCACCCATTTCTCTCTCCTCCGACCCACACTTCCCAACCCCATCCGACCCATCAAACATGTGCTCATTGGGTCCGCCGCCAAGCCATTCATCAAAGCCACAATCTCCAAACCCGCGGCTGAGATCTCCGGTACCTCTTCCACGACGGTTACTTCCAGTCAAACCTCATTGCACCCCTCCCCAGTCCCTCCTCTCAAGAGGGTCTCGTCCGATTCTCTGCAATACCAGCCCGGTTGCATCGGCGCTGTACCTGATAGAACGATTCATGATGGCATAGACGGTGTTGTGGGGGCAATGGAGTACTTAACCAACATACTGTCTTCCAAGGTGTATGATGTTGCCATCGAGTCACCGTTGCAGTTAGCGCCAAAGCTCTCCGAAAGGCTTGGCGCTCAAATCTGGCTCAAGAGAGAGGATTTACAACCCGTATTTTCCTTCAAGCTCCGTGGTGCTTATAATATGATGGCAAAAATTCCAAAAGAACAGTTGGAAAGAGGGGTTATCTGCTCTTCAGCAGGAAATCATGCACAAGGGGTTGCATTAGCTGCAAAGCGACTTGGTTGCAATGCTGTGATTGCTATGCCTGTTACCACACCTGAAATCAAGTGGAAGTCTGTTGAGAGATTGGGTGCGACAGTTGTTCTTGTGGGGGATTCGTATGATGAAGCACAGGCATATGCTAAACAACGGGGTGAAGAGGAGTGTCGCACATTTATACCTCCTTTTGATCATCCAGATGTCATCATGGGGCAGGGAACGATCGGAATGGAGATTGTGCGTCAGATGCAAGGCCCATTGGACGCAATTTTTGTACCTGTGGGTGGTGGGGGGTTAATAGCTGGTATCGCTGCTTATGTGAAGAGGGTTTCTCCAGAGGTAAAGATTATTGGGGTGGAGCCCTGTGATGCAAATGCAATGGCATTGTCGTTACATCACGATCAGAGAGTCATGCTAGACCAGGTGGGAGGTTTTGCGGATGGGGTTGCTGTGAAAGTGGTTGGTGAAGAAACTTTCCGCTTATGCAGGGAACTGATAGATGGGATAGTTCTTGTAAGCCGTGATGCTATATGTGCCTCAATAAAGAACATGTTTGAGGAGAAAAGGAGCATTTTAGAACCTGCAGGTGCGCTTGCCCTTGCTGGAGCTGAAGCGTACTGCAAATATTACGGCATCAAGGGAGGAAACATTGTAGCAATTACCAGTGGGGCAAACATGAACTTTGACAGGCTGAGACTAGTAACTGAACTTGCTGATGTTGGTCGGCAACGGGAGGCTGTGCTGGCAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAAGAAAAGGCTCTTGTACTATACAGTGTTGGCCTTCATACAGTGCTTGAACTCAGTGCAATGGTGGAACGGATGGAGTCTTCTCAGCTCACAACCCTCAATCTCACAAATGATGACTTGGTTAAAGATCATTTGAGACATTTGATGGGCGGGCGATCACATGTTGAGAATGAATTACTTTGTCGGTTTGTTTTCCCAGAGAGGCCAGGCACTCTGATGAAGTTTTTGGATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAGATGACTGAGTTCAAAAGACGCGCCGATGCTCTTGGATATGAATATGCAGTGGAGACCAGTAATAAGGCCTACCTGCTTTTGATGCATTGA 1821 47.83 MESLCFSTTHFSLLRPTLPNPIRPIKHVLIGSAAKPFIKATISKPAAEISGTSSTTVTSSQTSLHPSPVPPLKRVSSDSLQYQPGCIGAVPDRTIHDGIDGVVGAMEYLTNILSSKVYDVAIESPLQLAPKLSERLGAQIWLKREDLQPVFSFKLRGAYNMMAKIPKEQLERGVICSSAGNHAQGVALAAKRLGCNAVIAMPVTTPEIKWKSVERLGATVVLVGDSYDEAQAYAKQRGEEECRTFIPPFDHPDVIMGQGTIGMEIVRQMQGPLDAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPCDANAMALSLHHDQRVMLDQVGGFADGVAVKVVGEETFRLCRELIDGIVLVSRDAICASIKNMFEEKRSILEPAGALALAGAEAYCKYYGIKGGNIVAITSGANMNFDRLRLVTELADVGRQREAVLATLLPEEPGSFKQFCEMVGHMNITEFKYRYNPHKEKALVLYSVGLHTVLELSAMVERMESSQLTTLNLTNDDLVKDHLRHLMGGRSHVENELLCRFVFPERPGTLMKFLDTFSPRWNISLFHYRGQGEAGANVLVGIQVPETEMTEFKRRADALGYEYAVETSNKAYLLLMH* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18270756 18280508 - Vvi8g1078 Vvi8g1078 791301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1078 606 Gene3D Biosynthetic Threonine Deaminase; Domain 3 431 606 IPR038110 -
Vvi8g1078 606 CDD Thr-dehyd 109 413 - -
Vvi8g1078 606 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 46 606 - -
Vvi8g1078 606 ProSiteProfiles ACT-like domain profile. 432 504 IPR001721 -
Vvi8g1078 606 PANTHER THREONINE DEHYDRATASE 46 606 - -
Vvi8g1078 606 Gene3D - 157 248 IPR036052 -
Vvi8g1078 606 SUPERFAMILY ACT-like 513 605 IPR045865 -
Vvi8g1078 606 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 107 604 IPR005787 GO:0004794|GO:0009097
Vvi8g1078 606 MobiDBLite consensus disorder prediction 49 67 - -
Vvi8g1078 606 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 102 459 IPR036052 -
Vvi8g1078 606 CDD ACT_ThrD-I_1 431 515 - -
Vvi8g1078 606 CDD ACT_ThrD-I_2 525 605 - -
Vvi8g1078 606 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 145 158 IPR000634 GO:0006520|GO:0030170
Vvi8g1078 606 Pfam Pyridoxal-phosphate dependent enzyme 120 409 IPR001926 -
Vvi8g1078 606 ProSiteProfiles ACT-like domain profile. 526 597 IPR001721 -
Vvi8g1078 606 MobiDBLite consensus disorder prediction 49 77 - -
Vvi8g1078 606 Gene3D - 125 403 IPR036052 -
Vvi8g1078 606 Pfam C-terminal regulatory domain of Threonine dehydratase 518 601 IPR001721 -
Vvi8g1078 606 Pfam C-terminal regulatory domain of Threonine dehydratase 422 512 IPR001721 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1078 K01754 - vvi:100248644 1169.45