Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1079 ATGGGATCACTATGCCTCAGCGCCACCGCATTCCCCCCAGTCCGACCCATCAAACACGTACCCATTGCTACCACCCGTAAGCCATTCATCAGAGCCACGATCTGCAACCCCGTTCCCCTGACCATTACCTACAGCGAAACCTCATCGCCTCCTCTGAGAAAGGTGTCGCCAGATTCTCTGCAATACGAGGAGGGTTACCTGGGCGCCGTACCTGCTGGTAGGGTTGATGAGAGCAGAGAGGGTGTCGTGAAAGCAATGCGATACTTGACCAACATTCTATCTTCCAAGGTGTATGATATTAGCACTGAATCGCCATTGCAGTTAGCGCAAAACCTCTCCCGCAGGCTGGGGGTTCAGCTCTGGCTCAAGAGAGAGGATTTCCCACCTGTAATTGTTTCTCTCATCAACCTACTCTACTTTTACCATTTTTCATGGGTGTTTGTTTCTTTGGGTTTGGATTGTGCCTGCGTGTTTCCTTTTCTGCATATTGTGAACCTTCTTAATTTTTTATTTATTTTTATAAATATTTGGTTAAAAGGTTAA 543 47.15 MGSLCLSATAFPPVRPIKHVPIATTRKPFIRATICNPVPLTITYSETSSPPLRKVSPDSLQYEEGYLGAVPAGRVDESREGVVKAMRYLTNILSSKVYDISTESPLQLAQNLSRRLGVQLWLKREDFPPVIVSLINLLYFYHFSWVFVSLGLDCACVFPFLHIVNLLNFLFIFINIWLKG* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18284335 18284878 - Vvi8g1079 Vvi8g1079 791302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1079 180 Gene3D - 75 139 IPR036052 -
Vvi8g1079 180 PANTHER THREONINE DEHYDRATASE 51 131 - -
Vvi8g1079 180 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 51 131 - -
Vvi8g1079 180 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 80 130 IPR036052 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1079 K01754 - vvi:100248644 143.665