Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1080 ATGAAACCAAAGATCCTCAAAGCTGGTCTTCCTCTAGCTCTATCTGTGGCTGCTTTCATCATTGCCAAGATCATGGAGAGAAGAAATTTAGTTCCTAAAGCTTCATCATTTGAAAACCAAGTGGATTCACCCCCAGCTAATTCAATGGTGGAGAGTGTTGATGGCCTCAACTCAGCGTGCGTGCTTTTGGAGGAAGGTGAAGGACAGATAATCACAAACAGGTCTTTGGTAGAAAGTTCGGAAATTCAGGATCCGCCTGATCATGAAGAAGAGATTTTAGCCCTAAGACGCCAAATTGAACATCTTCAAGAGAGAGAATGGGAGCTCGCCATGCGGTTTCTCTGCTATTGTGAGATTAAAGAGCAAGAGTCTCGGCTTTTGGAGCTCAGGAGCCGGTTGCTGTTAGAGATAGCGCGTGTTGAGTTCTTGAATTGGGAGGTTTCGTTAATGGAGGCTGAGAACAAGAGGCACGAGGATTTGGTAGTGGAATATCTCAGAGTTGTAGAGCAGCTTGAGTTTTGGAAATTGGAAAATAGGTTGCTTCATAGGGAGGTAAAGAAGCTTGCCAAGAAAACCAGGCAGCAGTCTCGTGTTATAAGAGACTGCAATTTGAAGATAGAAGGTATAGAGAAGGAGATTTCAAGAAATCAGGAGGAGCTAGAGAGGAGGACCACTGCCATCAGTAAATTGGATAATGAAGTTAGGGAGCTGCAGGCTACTTTGAACCAAGTACAGGAGGAGAAGCATCAACTTTCAGACAAGCTCAAACTGGCAGAAAAATCAGCTCCATCCACATCTAAGAGTGAAGCAGAGGGAATAGCAAAGGAGGATTACAATCAACTTGTGAATGAGCTAGAACGGCTACACAAGGATCGAGCAGCCGAAGTTAAGGAATTGGTGTACTTAAGATGGAGTAACGCGTGCCTAAGGCATGAACTCATGAGGAATCAGAAACAACCGGAACAGAACCAGGAAAGCTGCCAATCGGAGTTAGATTTTGAACCAAAAGGAGAAACCGGGGAGCATGCCTCAGAGCATGAATTGGAGGGCACGGTTTTGGAGCCGCCCAGTGAACCTTGCCTAGGCGTGAGCAGTGGCAGTCATATTTCTTCAAAAAGGCCAAAAATACTTCAAAAGCTTAGAAGATGGGTGGATGGGAGTGAGAAAATAAAACCAACATCAGAGGAAGGAGAAGAGCACGAAATCAAGTGCTTTGGGAAGCATTGTGTTTTACACAAGGCAGAGGAGCACCATGTTCATAAAAATAATGCTCTGTCCGTTATCATGAATTCACAAATTCCTGACCATTCATACTCAATGTAA 1323 44.37 MKPKILKAGLPLALSVAAFIIAKIMERRNLVPKASSFENQVDSPPANSMVESVDGLNSACVLLEEGEGQIITNRSLVESSEIQDPPDHEEEILALRRQIEHLQEREWELAMRFLCYCEIKEQESRLLELRSRLLLEIARVEFLNWEVSLMEAENKRHEDLVVEYLRVVEQLEFWKLENRLLHREVKKLAKKTRQQSRVIRDCNLKIEGIEKEISRNQEELERRTTAISKLDNEVRELQATLNQVQEEKHQLSDKLKLAEKSAPSTSKSEAEGIAKEDYNQLVNELERLHKDRAAEVKELVYLRWSNACLRHELMRNQKQPEQNQESCQSELDFEPKGETGEHASEHELEGTVLEPPSEPCLGVSSGSHISSKRPKILQKLRRWVDGSEKIKPTSEEGEEHEIKCFGKHCVLHKAEEHHVHKNNALSVIMNSQIPDHSYSM* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18292878 18294427 + Vvi8g1080 Vvi8g1080 791303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1080 440 Coils Coil 278 298 - -
Vvi8g1080 440 MobiDBLite consensus disorder prediction 251 272 - -
Vvi8g1080 440 MobiDBLite consensus disorder prediction 331 352 - -
Vvi8g1080 440 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 426 IPR040265 -
Vvi8g1080 440 Coils Coil 199 261 - -
Vvi8g1080 440 PANTHER CHUP1-LIKE PROTEIN 1 426 - -
Vvi8g1080 440 Coils Coil 171 191 - -
Vvi8g1080 440 MobiDBLite consensus disorder prediction 317 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1080 - - - vri:117920940 821.617
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1080 . . . . . . . . Cmo06g00424 Cmo14g00245 . . . . . . Cpe08g01060 . . . . . . . . . . . . . . . . Cone13ag1228 . . . . Cme04g02453 . . . . . . . . Sed02g0586 . . . . . Car14g00232 . . Bhi11g02010 Tan08g1801 Cmetu04g2072 . Hepe05g0320 . . . . . . . . . Lsi03g01956 Csa03g03356 Chy04g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014217 0 1 0 0 0 1 1 1 1 0 0 1 0 1 1 2 1 1 2 1 1 2 1 1 1 0 0 0 1 1 23