Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1084 ATGGGAACGCACGGTAGCAGCAGTAGGAGAAAGAAGAGTCGAAGAAGATCCGACGATTCCGACGATTCTGATACCCCTGACTCCTCGCCGGATAGGTCCTCCACCAAACGAAGAGAACGCAGCCGCAGCAGTCGCCGCCGGAGCTCTTCGCGACATTTGGATGATTCCGATAGCAGTGGAAAAAGTGATGGTGGCGGAAAGAAGAGGTCCTCCAGAAACATTACCGAAGAGGAAATTGCTGACTATTTGGCCAAAAAAGCTCAGAAAAAAGCGTTGCGAGTTGCTAAGAAGTTGAAGTCGCAGACCGTTTCCGGGTATTCCAATGATTCAAATCCATTTGGTGATGCCAATCTCAATGAAAAATTTGTGTGGCGAAAGAAGATTGAACGTGATGTTTCTCAAGGTGTTCCACTTGACACGTTTTCAGTAAAGGCCGAGAAAAAAAGACAGAGAGAAAGGATGGCAGAGATTGAAAAGGTGAAAAAGAGAAGGGAGGAAAGGGCAATTGAAAAGGCACAACATGAGGAAGAAATGGCATTGCTTGCTAGAGAACGTGCTCGGGCTGAGTTCCAAGATTGGGAGAAGAAAGAAGAAGAGTTCCATTTTGATCAAAGCAAAGTCAGATCAGATATTAGATTGCGCGAAGGGCGTTTAAAGCCTATTGATATTCTCTCCAATCTGCTCAATGGCTCAGATGATTTTGATATGGATATAAGCGAACCATATATGGTCTTCAAGGGTTTGACAGTAAAAGAAATGGAAGAACTCCGTGATGACCTCAAAATGCATCTAGATATGGACAGGGCAACACCAACACATATAGAGTATTGGGAGGCACTCTTGGTGGTTTGTGATTGGGAACTAGCTGAAGCTCGAAAAAAAGATGCATTGGATCGAGCTAGGGTGCGGGGGGAGGAACCACCTGCCGAGTTGCTTGCTGAAGAAAGGGGTCTGCATTCAAGTATTGAAGCAGATGTCAAGAATCTTCTGCAAGGGAAAACATACAGTGAGTTGGAGGTATTGCAATCACATATTGAGTCACAAATGCGTTCTGGCACAGCAAAAGTGGTAGAGTACTGGGAGGCTGTTCTAAAACGCCTCCATATATACAAGGCAAAGGCTTGCTTGAAGGAAATTCATGCCAAAATGCTACACAAGCATCTTCAATATCTTGAGCCTCATTCAGAGAGTGAAGATGAATTAGAAGCAGAACCTGGTCCAGAGCCTAAAGTGGAGGATAGCATCCAAGATCTAGAAGATGCTCAAACATTCTCTCCAGAACCCATTTTGCATGAAGAGGCTCATGAAGCAGAAGAAGAGGCTGGTTCATTTTCACCAGAGCTGTTGCATGGTGACGAAAATGAAGAAGCAATTGATCCTGAAGAGGATAGAGCTATACTGGAACGGAAACGCATTGCAGTGTTAGAAGAACAGCAAAAACGGATTCAAGAAGCAATGGCTTCAAAACCAACTCCATCTGAAGACAACTTGGAGCTGAAGGTCATGAAAGCTATGGGAGCCATGGAAGAAGGTGATGCAGTATTTGGCTCTGGTGCTGAAGTAAACCTGGACTCTCAGGTGTACTGGTGGCATGACAAGTACCGACCTAGGAAGCCAAAGTACTTCAACCGTGTTCATACTGGATATGAGTGGAACAAATACAATCAAACTCACTATGATCATGATAACCCACCTCCAAAGATTGTGCAAGGATACAAATTCAATATTTTCTACCCAGACCTGGTGGACAAGACGAAGGCTCCAGTTTATACCATTGAGAAGGATGGGAGCAGTGGGGAGACGTGCCTGATTAGATTTCACGCTGGGCCACCCTATGAAGATATTGCATTCCGGATTGTGAATAAAGAATGGGAATATTCTCATAAGAAGGGGTTTAAGTGCACATTCGAACGGGGTATTTTGCATGTTTATTTCAACTTCAAGCGCTACCGATACCGCAGGTGA 1965 44.63 MGTHGSSSRRKKSRRRSDDSDDSDTPDSSPDRSSTKRRERSRSSRRRSSSRHLDDSDSSGKSDGGGKKRSSRNITEEEIADYLAKKAQKKALRVAKKLKSQTVSGYSNDSNPFGDANLNEKFVWRKKIERDVSQGVPLDTFSVKAEKKRQRERMAEIEKVKKRREERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSDIRLREGRLKPIDILSNLLNGSDDFDMDISEPYMVFKGLTVKEMEELRDDLKMHLDMDRATPTHIEYWEALLVVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSIEADVKNLLQGKTYSELEVLQSHIESQMRSGTAKVVEYWEAVLKRLHIYKAKACLKEIHAKMLHKHLQYLEPHSESEDELEAEPGPEPKVEDSIQDLEDAQTFSPEPILHEEAHEAEEEAGSFSPELLHGDENEEAIDPEEDRAILERKRIAVLEEQQKRIQEAMASKPTPSEDNLELKVMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPVYTIEKDGSSGETCLIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18315485 18325154 - Vvi8g1084 Vvi8g1084 791307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1084 654 MobiDBLite consensus disorder prediction 97 116 - -
Vvi8g1084 654 MobiDBLite consensus disorder prediction 12 38 - -
Vvi8g1084 654 Pfam Cactus-binding C-terminus of cactin protein 530 654 IPR019134 GO:0005515
Vvi8g1084 654 Coils Coil 147 191 - -
Vvi8g1084 654 MobiDBLite consensus disorder prediction 100 115 - -
Vvi8g1084 654 MobiDBLite consensus disorder prediction 393 413 - -
Vvi8g1084 654 MobiDBLite consensus disorder prediction 48 77 - -
Vvi8g1084 654 SMART CactinC_cactus_3 530 654 - -
Vvi8g1084 654 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 1 654 - -
Vvi8g1084 654 PANTHER BNAC05G02180D PROTEIN 1 654 - -
Vvi8g1084 654 MobiDBLite consensus disorder prediction 1 77 - -
Vvi8g1084 654 Pfam Conserved mid region of cactin 183 380 IPR018816 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1084 K25058 - vvi:100245238 1167.53