Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1085 ATGGCGGTTCCTCCGACCGTCCCTGCCGCTCCGGCTTCGCTCTACGTTGGTGACCTGCACCCTGATATCACCGATGGCCTGCTTTTCGACGCCTTCTCCGAATTTAAAAGCCTCGCCTCTGTGCGCATCTGCCGTGACTCCTCCTCTGGCCGTTCCCTCTGTTACGGTTACGTCAACTTCATCTCTCCTCAAGACGCTTCTCATGCCATTGAGGCAAAGAATCACACTATGCTGCATGGAAAAGTGATAAGAGTTATGTGGTCACATCGTGATCCAGATGCAAGAAGGAGTGGAATAGGGAATGTGTTTGTTAAGAATTTGAGTGACTCAATAGATAATGTGAGGCTTCAAGCCATGTTTCAGAAATTTGGCAATATTTTGTCTTGTAAAGTGGTTGTGACTGAGGATGGGAAGAGCAAAGGATATGGTTTCGTTCAGTTTGAGTCTGAGGAATATGCAAATGCTGCCATTGAGAAGCTAAATGGCTTCATTATTGACGGCAAACAGATATATGCTGGGAAGTTTGTCAGAAAGACTGATAGGGTTCTGCCCAATCCTGATGCCAAATATACAAATCTTTACATCAAGAATTTGGATCCAGATGTCACAGAAGAAGCTCTACGAGAGAAGTTCTTTGAGTTTGGGAAAATTGCTAGCTTGGTTATTTCTAAGGATGAAAATGGGATGTCCAGAGGTTTTGGTTTTGTGAACTTTGAGAGCCCGGAAGATGCCAAACGAGCACTGGAAGCATTAAATGGATTGCAACTTGGTTCGAAGGTTCTGTATGTAGCAAGGGCACAGAAGAAAGCCGAACGTGAGCAGCTTTTGCGTCGCCAATTTGAGGAGAAACGTAACGAGCAAATCTTAAAATACAGGGGTTCAAATGTGTATGTCAAGAACATTGATGATAATGTCAATGATGATGACCTGCGGGAACACTTTAGTGTGTGCGGCAAGATCACTTCTGCAAAACTCATGCGAGATCAAAAAGGGATAAGCAAGGGGTTTGGATTTGTCTGCTTCTCCACTCCTGATGAGGCCAGTAAAGCTGTGAACACTTTTCATGGGTACATGTTTCACAGAAAGCCATTGTATGTGGCTATTGCTCAAAGGAAAGAGGACAGGCAAGCACAACTGCAGCTTCATTATGCACAACGTATGGCAGGACTTGCAGGACCTTCTACTCCTGTTATCCCTGGTGGATATCCTCCTCTGTACTACACAGCTCCTCCTGGTGTTATACCTCCAAGACAGGGCCTGATGTATCAGCCTTTGGGTTTGCGCACAGGATGGAGAGCTAACAACCTTATACCTCCAACCAGACCAGCTTTTCAGCCATCATCAATTCCCTTGATGCCTAATACTCCAAGGCAGCACAGGCAAAACAGGGGCAGGACAAATGGGCATATTCCACAGGGTGGTGGTCACTCTACTGCATTTATGCCACATTTGCAGCAGCCAACTCAACCAGTGATTTCACCAAAAGATTCAATCAATCAGCAGCGGGCTGGGCAGGCTAAGTATGTGCCAAATGGCCGTTCCTATGAGATGAGCAAAGGATCTGGAATCCCATCTGCTGCTTCCAATTCTGTTGGAACTGGATCTCAAGGATCGGAGATGCTGAGTAGCATGCTTGCTGCTGCTTCTCCTGAGCAGCAGAAGCAGATTCTGGGCGAGCATCTCTATCCCCTTGTCCAGAAACAAAAGCCTGATCTTGCTGCAAAGATAACGGGAATGCTTTTGGAGATGGACAACTCGGAACTGCTCCTGTTATTGGAATCCCCTGAGTCATTGGCTGCCAAAGTGGAAGAAGCTGTGCAGGTGCTCAAGCTCTCCAAATCTAAACCATCTGGACAGGACACACTTCATCCTAGTTACCTGGCTGCTGAGGTTGCGGTTAACTGA 1905 46.61 MAVPPTVPAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQPSSIPLMPNTPRQHRQNRGRTNGHIPQGGGHSTAFMPHLQQPTQPVISPKDSINQQRAGQAKYVPNGRSYEMSKGSGIPSAASNSVGTGSQGSEMLSSMLAAASPEQQKQILGEHLYPLVQKQKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKLSKSKPSGQDTLHPSYLAAEVAVN* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18326469 18334223 - Vvi8g1085 Vvi8g1085 791308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1085 634 Gene3D - 181 276 IPR012677 -
Vvi8g1085 634 SUPERFAMILY RNA-binding domain, RBD 290 387 IPR035979 GO:0003676
Vvi8g1085 634 SUPERFAMILY RNA-binding domain, RBD 183 279 IPR035979 GO:0003676
Vvi8g1085 634 CDD RRM3_I_PABPs 190 269 - -
Vvi8g1085 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Vvi8g1085 634 SUPERFAMILY RNA-binding domain, RBD 12 178 IPR035979 GO:0003676
Vvi8g1085 634 Gene3D - 5 100 IPR012677 -
Vvi8g1085 634 MobiDBLite consensus disorder prediction 521 537 - -
Vvi8g1085 634 Pfam Poly-adenylate binding protein, unique domain 544 609 IPR002004 GO:0003723
Vvi8g1085 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vvi8g1085 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vvi8g1085 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vvi8g1085 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Vvi8g1085 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 170 IPR000504 GO:0003723
Vvi8g1085 634 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vvi8g1085 634 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vvi8g1085 634 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vvi8g1085 634 PANTHER POLYADENYLATE-BINDING PROTEIN 529 619 - -
Vvi8g1085 634 PANTHER POLYADENYLATE-BINDING PROTEIN 5 504 - -
Vvi8g1085 634 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 610 IPR006515 GO:0003723
Vvi8g1085 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vvi8g1085 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 537 614 IPR002004 GO:0003723
Vvi8g1085 634 Gene3D - 277 382 IPR012677 -
Vvi8g1085 634 Coils Coil 263 286 - -
Vvi8g1085 634 MobiDBLite consensus disorder prediction 517 537 - -
Vvi8g1085 634 SUPERFAMILY PABC (PABP) domain 541 620 IPR036053 GO:0003723
Vvi8g1085 634 PANTHER RNA BINDING PROTEIN 5 504 - -
Vvi8g1085 634 PANTHER RNA BINDING PROTEIN 529 619 - -
Vvi8g1085 634 SMART poly_2 549 612 IPR002004 GO:0003723
Vvi8g1085 634 CDD RRM2_I_PABPs 98 174 IPR045305 -
Vvi8g1085 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vvi8g1085 634 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vvi8g1085 634 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vvi8g1085 634 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vvi8g1085 634 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vvi8g1085 634 CDD RRM1_I_PABPs 13 92 - -
Vvi8g1085 634 Gene3D - 101 180 IPR012677 -
Vvi8g1085 634 Gene3D - 535 614 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1085 K13126 - vvi:100267544 1208.36