Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1087 ATGGCGGAAGATGCACCAAAGCCAAAGCAACTGTGGGGAGATGTGGAAGATGATCCTCCGTCTTCATCTTCCACACCTGCAGTCGACCTCCCCGTGGAGTCTTTGACTATTCACGATGAGGCCAAGGAGGCCGAATCACTTGACGAGCCGAAGGATTCGAGCATCCAGGCGGTTACTTCTGGTGATACACCATACACTTCTGCCAGTACTTTTGAGGATTTGAATTTGTCACCAGAGCTGTTGAGGGGGATTTATAGTGAGATGAAGTTTGAGAGGCCTAGTAAAATTCAGGCAATCAGTTTGCCTATGATTTTGACTCCTCCTTACAAAAATTTAATTGCTCAAGCTCACAATGGTTCTGGCAAGACGACTTGTTTTGTACTTGGAATGTTGAGTCGTGTTGATCCAAAGCTGCAAGTTCCTCAGGCCCTTTGCATTTGTCCTACAAGAGAATTGGCAATACAGAATTTGGAGGTGCTTCGTAAGATGGGAAAGCACACAGGGATTGAATCTGAATGCGCTATTCCAATGGACAGTGCAAACTATACTTCAATTTCACAGCGACCACCGGTGAAGGCGCAGGTAGTGATCGGCACACCTGGTACAGTAAAGAAATGGATGTCACATAGAAAATTGGGCATAAGCAACATGAAGATTCTTGTTTTTGATGAAGCTGATCACATGTTGGCTGAGGATGGATTTAAGGATGATTCTTTGAGGATAATGAAGGCTATTGAAAAGAGTGGTGCTCAATGCCAGGTGCTTCTGTTTTCTGCTACTTTCAACGATACAGTAAAAAATTTTGTAACAAGGATAGTCAAAGACTACAATCAAATGTTTGTAAAGAAAGAAGAACTATCCTTGCAGTCTGTGAAGCAGTATAAGGTGAAATGCCCTGATGAACTCTCCAAGATTCTTGTGATTAAAGACAAAATTTTTGAGATAGGACAGAAGCTGGGGCAAACAATTATTTTTGTCAGGACGAAGAATAGTGCAGGAATGTTACACAAAGCACTTGTGGATTTTGGTTACGAAGTTACTACCATTCAAGGAGCTCTTAGACAAGAAGATAGAGACAAGATAATCAAGGAGTTCAAGGATGGATTAACCCAAGTTCTCATATCGACTGATCTCCTTGCCCGAGGTTTCGACCAGTCAAGGGTGAACTTGGTCGTCAATTATGATCTGCCGCTAAAATATGGGACACAGGCAGAGCCTGACTATGAGGTGTATTTGCATAGAATTGGTAGGGCAGGACGTTTTGGCCGCAAGGGAGCTGTTTTTAATTTGCTGTGCAGTGACAAGGACAACATCCTGATCTCAAAAATTGAAAATCATTTTGGGGTTCAGATTGCAGAGATTCCTTCGTGGCAAAATGATGATGACTTTGAGGCGGCAATGAAAGATGCTGGACTTTGTTAG 1422 42.83 MAEDAPKPKQLWGDVEDDPPSSSSTPAVDLPVESLTIHDEAKEAESLDEPKDSSIQAVTSGDTPYTSASTFEDLNLSPELLRGIYSEMKFERPSKIQAISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRVDPKLQVPQALCICPTRELAIQNLEVLRKMGKHTGIESECAIPMDSANYTSISQRPPVKAQVVIGTPGTVKKWMSHRKLGISNMKILVFDEADHMLAEDGFKDDSLRIMKAIEKSGAQCQVLLFSATFNDTVKNFVTRIVKDYNQMFVKKEELSLQSVKQYKVKCPDELSKILVIKDKIFEIGQKLGQTIIFVRTKNSAGMLHKALVDFGYEVTTIQGALRQEDRDKIIKEFKDGLTQVLISTDLLARGFDQSRVNLVVNYDLPLKYGTQAEPDYEVYLHRIGRAGRFGRKGAVFNLLCSDKDNILISKIENHFGVQIAEIPSWQNDDDFEAAMKDAGLC* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18352789 18358484 + Vvi8g1087 Vvi8g1087 791310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1087 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 462 IPR001650 -
Vvi8g1087 473 CDD DEADc_DDX19_DDX25 76 279 - -
Vvi8g1087 473 MobiDBLite consensus disorder prediction 1 70 - -
Vvi8g1087 473 Pfam DEAD/DEAH box helicase 95 267 IPR011545 GO:0003676|GO:0005524
Vvi8g1087 473 CDD SF2_C_DEAD 291 431 - -
Vvi8g1087 473 Gene3D - 286 462 IPR027417 -
Vvi8g1087 473 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 453 - -
Vvi8g1087 473 Pfam Helicase conserved C-terminal domain 314 422 IPR001650 -
Vvi8g1087 473 Gene3D - 48 285 IPR027417 -
Vvi8g1087 473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 279 IPR014001 -
Vvi8g1087 473 PANTHER DEAD-BOX HELICASE DBP80 48 453 - -
Vvi8g1087 473 SMART ultradead3 89 294 IPR014001 -
Vvi8g1087 473 MobiDBLite consensus disorder prediction 35 50 - -
Vvi8g1087 473 MobiDBLite consensus disorder prediction 52 70 - -
Vvi8g1087 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 440 IPR027417 -
Vvi8g1087 473 SMART helicmild6 333 422 IPR001650 -
Vvi8g1087 473 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 69 98 IPR014014 GO:0003724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1087 K18655 - vvi:100257270 940.643