Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1089 ATGCAGGATGGATTTAAGGATGATTCTTTGAGGATAATGAAGGATATTCAAAGGAGTGGTGCTCAATGCCAGGTGCTTCTGTTTTCTGCTACTTTCAATGATACAGTAAAAAATTTTGTAACAAGGATAGTCAAAGACTACAATCAAATGTTTGTAAAGAAAGAAGAACTATCCTTGCAGTCTGTGAAGCAGTATAAGGTGAAATGCCCTGATGAACTCTCCAAGATTCTTGTGATTAAAGACAAAATTTTTGAGATAGGACAGAAGCTGGGGCAAACAATTATTTTTGTCAGGACGAAGAATAGTGCAGGAATGTTACATAAAGCACTTGTGGATTTTGGTTACGAAGTTACTACCATTCAAGGAGCTCTTAGACAAGAAGATAGAGACAAGATAATCAAGGAGTTCAAGGATGGATTAACCCAAGTTCTCATATCGACTGATCTCCTTGCCCGAGGTTTCGACCAGTCAAGGGTGAACTTGGTCGTCAATTATGATCTGCCGCTAAAATATGGGACACAGGCAGAGCCTGACTATGAGGTGTACTTGCATAGAATTGGCAGGGCAGGACGTTTTGGCCGCAAGGGAGCTGTTTTTAATTTGCTGTGCAGTGACAAGGACAACATCCTGATCTCAAAAATTGAAAATCATTTTGGGGTTCAGATTGCAGAGATTCCTTCGTGGCAAAATGATGATGACTTTGAGGCGGCAATGAAAGATGCTGGACTTTGTTAG 735 40.41 MQDGFKDDSLRIMKDIQRSGAQCQVLLFSATFNDTVKNFVTRIVKDYNQMFVKKEELSLQSVKQYKVKCPDELSKILVIKDKIFEIGQKLGQTIIFVRTKNSAGMLHKALVDFGYEVTTIQGALRQEDRDKIIKEFKDGLTQVLISTDLLARGFDQSRVNLVVNYDLPLKYGTQAEPDYEVYLHRIGRAGRFGRKGAVFNLLCSDKDNILISKIENHFGVQIAEIPSWQNDDDFEAAMKDAGLC* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18385617 18387861 + Vvi8g1089 Vvi8g1089 791312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1089 244 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 78 233 IPR001650 -
Vvi8g1089 244 PANTHER DEAD-BOX HELICASE DBP80 3 224 - -
Vvi8g1089 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 211 IPR027417 -
Vvi8g1089 244 Gene3D - 63 236 IPR027417 -
Vvi8g1089 244 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 224 - -
Vvi8g1089 244 Pfam Helicase conserved C-terminal domain 85 193 IPR001650 -
Vvi8g1089 244 SMART helicmild6 104 193 IPR001650 -
Vvi8g1089 244 Gene3D - 1 62 IPR027417 -
Vvi8g1089 244 CDD SF2_C_DEAD 62 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1089 K18655 DDX19, DBP5; ATP-dependent RNA helicase DDX19/DBP5 [EC:3.6.4.13] - vvi:100854880 484.182
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1089 . . . . . Bpe03g01264 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02459 Blo07g01373 . . Bda05g01202 . . . . Sed02g0588 . . . . . . Cpe03g00219 . Bhi11g02019 Tan08g1809 Cmetu09g1198 . . . . Cla10g01864 Cam10g1921 Cec10g1976 Cco10g1948 Clacu10g1938 Cmu10g2682 Cre10g2070 Lsi03g01960 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1