Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1090 ATGAAGCTGGTAGAAGAAGAAAAAATCCTTCCTAATAGCAGTGGAATCATCAATATCGTTCCTGAAGAACCAGATGACATGTGGCTCCTCTACAATTTGATTTCTAAGGGCGATGTCATCGTTGCCGATACAACCCGCAAAACCGCCTTTGGCAGAGTTAGACTCACACTTGAAATCAAAATCACCGCCATCGATTATGATAAAGTAGGCTCAGTAATCCGCGTCGCCGGCAGGAACTTGGTGCACAATGAACACGTAGACGCCGGTGCCTTCCACACCATAGAGATTGAGAGGAATAAACCGTTTGACCTGAAGAAGAAAGTTTGGGATTCTGATGCAATCGAGGAACTACGCTCCTACGGCAATGCTGCTAAAGCAGACCTCGCAGTCTTGTTGATACAAGACGTATCCGCGGAGTTGTACTCGATAGGGAAAATAGCCACTACACTTTGTGCCAACATTGAAGCCCCATCTAAAACCAATAGAGCTGCAAAATCGAAATCTCAGTCAAAGTCAAACAAGTTTTTTGAAAACATTTTAACAGAATTTGTAAAGCACGTAAATTTCAACTTCGTAAGCTTGGTCATAATAGCAAGTCCTGTTGGGACGGAGTTTCGGCAATACTTGCTAGCAGAATCACGAAGGCAGAAGCTGCAGCAAATAGAAGAAAATAAGGAACGTGTGGTAGTGGTGAATACTTCGGGAAAAGCAACTTTGAAAGCGGTGTTGCAAGAGCCCGAGGTAATGAAATTGATTCGGGGCAAAAACGGGGCAGTGGAGATAACAGCATGGAAGGATTTGTGCGACATGTTGAGCAACGATTCAAGTAGGGCGTGTTATGGATCAAAGAGTGTGGAGAAGGCAAATGAATTGATGGCAATCGACACCCTGTTTATAAGTGATGAACTTTACCGGAGTGCAAACCATGGAAGTAGGCACAAGTACACGGATTTAGTTAAGTCGGTAAAGAAGGCGGGAGGGAAGGCCTTGGTATATTCACACAATCATGTAATGGGAGAGCAGTTAGGTCAGTTAACTGGGATTGCTGCTATTCTTAGGTTTCCATTGCCTGATCTGGATGACATGGAATTGTGA 1095 44.11 MKLVEEEKILPNSSGIINIVPEEPDDMWLLYNLISKGDVIVADTTRKTAFGRVRLTLEIKITAIDYDKVGSVIRVAGRNLVHNEHVDAGAFHTIEIERNKPFDLKKKVWDSDAIEELRSYGNAAKADLAVLLIQDVSAELYSIGKIATTLCANIEAPSKTNRAAKSKSQSKSNKFFENILTEFVKHVNFNFVSLVIIASPVGTEFRQYLLAESRRQKLQQIEENKERVVVVNTSGKATLKAVLQEPEVMKLIRGKNGAVEITAWKDLCDMLSNDSSRACYGSKSVEKANELMAIDTLFISDELYRSANHGSRHKYTDLVKSVKKAGGKALVYSHNHVMGEQLGQLTGIAAILRFPLPDLDDMEL* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18390357 18391452 - Vvi8g1090 Vvi8g1090 791313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1090 364 Pfam eRF1 domain 1 1 118 IPR005140 -
Vvi8g1090 364 SUPERFAMILY Translational machinery components 124 252 - -
Vvi8g1090 364 PANTHER PELOTA 1 363 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vvi8g1090 364 Gene3D eRF1 domain 2 127 252 IPR042226 -
Vvi8g1090 364 Pfam eRF1 domain 3 262 356 IPR005142 -
Vvi8g1090 364 SUPERFAMILY L30e-like 260 361 IPR029064 -
Vvi8g1090 364 Gene3D Pelota, domain A 2 126 IPR038069 -
Vvi8g1090 364 SMART eRF1_1_2 1 122 IPR005140 -
Vvi8g1090 364 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 363 - -
Vvi8g1090 364 TIGRFAM pelota: mRNA surveillance protein pelota 1 356 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vvi8g1090 364 Gene3D - 257 364 IPR029064 -
Vvi8g1090 364 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 119 IPR038069 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1090 K06965 - vvi:100241884 700.279