Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1094 ATGAGAATCAAAACCACCCTCTTCTTTTGGTCCTCTGCTTTTCTCATTGCACTTCTTTCTATTACAGTTGCCCTCTTTACTATCTCTTCTTCCACTGCCACTATTACTCAAGGTGACCTTGAACTGGCCTTTCTCCGAAGGATTGTCAAGCAAAGCGGCGTAGAGGACTTCCTGTCTCTTTTAAATCAAGCCACTGATAGAGCATCCCAGAGGCACCACCACCACCACCATCATCATCGGAAGCCTGAGGTCATATGCGATGATGCCAAATGGAAGTCTAAGATCATATCGAGTTATAATGTTTCCCTTATTTTGACGGTGGATTTAAAGGGTTGTGCAAATTTCAGCAGTGTGCAGAAGGCGGTAGATGCTGTTCCTGATTCTAGCCTCTCCAGGACCCTCATCATTATGGATTCCGGCATTTACAGGGAAAAGGTAGTAGTGGGCGCTAGCAAGACGAATTTGATATTTCAAGGCCAGGGTTATCTTAATACAGCCATAGCATGGAACGACACTGCAAATTCTACTGGAGGGACCTCCTACAGCTATTCAGTGGCCATCTTTGCTCCCAACTTCACAGCATACAACATTAGCTTTCAGAATACAGCTCCTCCAGCATCACCTGGCGATGTTGGAGGGCAGGCAGTGGCGCTTAGAGTCGCAAATGATCAAGCCGCATTCTATGGTTGTGGATTTTATGGAGCCCAAGACACGCTTCATGATGATCGAGGGAGGCATTATTTTAGAGAATGTTTCATCCAAGGATCCATTGATTTCATCTTTGGAAATGCTAGATCCCTCTATGAGGAGTGCACAATAAATTCCACAGCGAAAGAGGTCTCATCTGGAATAAGCGGAGCGATCACAGCTCAAGGGAGGCAATCAGTGGATGAGAAAACAGGGTTTTCCTTTGTAAAGTGTGTAATTGGTGGAACTGGAAGAGTGTGGCTTGGCAGAGCTTGGGGAGCCTATGCCACTGTGGTTTTTTCTAACACATACATGGCCGATCTTGTAGCTTCAGATGGATGGAATGATTGGAGAGACCCCTCTAGAGACCAGACCGTCTTCTTCGGAGAATATGATTGCAAGGGACCAGGATCAAACAACACATACAGGGTGTCCTATGCAAAGCAACTGATGCAGTCGGAAGCAGCCCCTTACCTGGATGTTTCATACATTGATGGAAATGAATGGCTTCTTCCCCTTCCAAAGGATCCAACAAATGAAAGGCACAGAAAAATATGTCACGCATGCAGGTATCTTCTAAATCAATTTCATTTTATCACTATGGTGGCTGCCATGGAGAAAAACTCTTTCCTTTTTCTCTCCTTTCTTGTACTTTTTCCATTGCTTCATGGATATACTGCTTTTGCCGCAGGAACGGATGATGGGTCTGAGCAGTGGGGATACGTGGAAGTCCGACCCAAGGCACACCTATTTTGGTGGCTCTACAAAAGTCCTGACAGAGTGGAAGATCCATCCAACCCATGGCCTATACTTCTGTGGCTCCAGGGAGGCCCTGGAGGCTCTGGAGTTGGGTTTGGAAATTTCTTGGAGATAGGACCATTGGACGGGAATTTGCAGCCTCGCAATTCAACTTGGCTCCGGAAGGCTGACCTCTTATTTGTGGATAGTCCTGTGGCAACAGGTTTTAGTTATGTGGAGGACGAGAGCTTGGTGGTTACCACTGATGATGAGGCTGCAACGGATCTGACCACCCTGTTGAAGGAGCTATTCAATGGAAACGAGACCCTCCAAAAAAGTCCTCTCTACATTGTTGCGGAGTCTTATGGAGGAAAATTTGCAGTCACTCTTGGGCTGTCGGCTTTAAAAGCAATTGAAGCAGGGGAATTGAAGCTTCAACTTGGGGGGGTTGCTTTGGGAGATAGTTGGATATCTCCTGAAGATTTTGTGTTGTCATGGGGACCTCTACTTAAGGACGTCTCACGGCTCGATGGCAACGGATTGAATAGCTCAAACAGACTAGCACTCCAGATACAGCAGCAGCTTGCAGAAGGGCAATACAAAGAAGCAACAGAAACATTTTTTGAACTTGAGAATGTGATTTCCATCAGCAGTAACGATGTGGACTTCTACAACTTCATGGTGGATTATGCAAACGATCCCGTCCTTTCTACGTCTGGGGGATGGAATGAAGTAATGATGGGAAGGGACCCGCGATATCTTGGTGCCAAGAAATCTTTATCAAGTAATGGTTCATCTTCTACGGATGACCTTCCCAGCTTAATGAATGGACCTATCAGAGAAAAGCTAAAGATTATCCCTGAAAGTGTAAGTTGGGGAGGACAGGGTAACCTTGTTTTTCCTGCAATGGCTGGTGATTTCATGAGACCAAGAATAAACGAGGTTGACGAACTCCTAGCCAAGGGCATAAACGTGACAATATACAATGGACAGCTTGATGTCATATGCTCAACCAAAGGTGCTGAAGCATGGCTCGACAAACTCAAATGGGGTGATTTGAAAACCTTCTTGAGCTTGGACCGTACTCCATTGTATTGTGGCAACGATGAAACGACTACAAAAGGATTTGTCAAGTCATACAAAAACTTGTTCTTCTATTGGATTCTGGGGGCCGGCCACTTTGTTCCAGTAGAGCAGCCCTGTGTTTCTCTGGAGATGGTGGGCAACATTACTCGATCACCAAATCTTCATTCGTAA 2682 45.71 MRIKTTLFFWSSAFLIALLSITVALFTISSSTATITQGDLELAFLRRIVKQSGVEDFLSLLNQATDRASQRHHHHHHHHRKPEVICDDAKWKSKIISSYNVSLILTVDLKGCANFSSVQKAVDAVPDSSLSRTLIIMDSGIYREKVVVGASKTNLIFQGQGYLNTAIAWNDTANSTGGTSYSYSVAIFAPNFTAYNISFQNTAPPASPGDVGGQAVALRVANDQAAFYGCGFYGAQDTLHDDRGRHYFRECFIQGSIDFIFGNARSLYEECTINSTAKEVSSGISGAITAQGRQSVDEKTGFSFVKCVIGGTGRVWLGRAWGAYATVVFSNTYMADLVASDGWNDWRDPSRDQTVFFGEYDCKGPGSNNTYRVSYAKQLMQSEAAPYLDVSYIDGNEWLLPLPKDPTNERHRKICHACRYLLNQFHFITMVAAMEKNSFLFLSFLVLFPLLHGYTAFAAGTDDGSEQWGYVEVRPKAHLFWWLYKSPDRVEDPSNPWPILLWLQGGPGGSGVGFGNFLEIGPLDGNLQPRNSTWLRKADLLFVDSPVATGFSYVEDESLVVTTDDEAATDLTTLLKELFNGNETLQKSPLYIVAESYGGKFAVTLGLSALKAIEAGELKLQLGGVALGDSWISPEDFVLSWGPLLKDVSRLDGNGLNSSNRLALQIQQQLAEGQYKEATETFFELENVISISSNDVDFYNFMVDYANDPVLSTSGGWNEVMMGRDPRYLGAKKSLSSNGSSSTDDLPSLMNGPIREKLKIIPESVSWGGQGNLVFPAMAGDFMRPRINEVDELLAKGINVTIYNGQLDVICSTKGAEAWLDKLKWGDLKTFLSLDRTPLYCGNDETTTKGFVKSYKNLFFYWILGAGHFVPVEQPCVSLEMVGNITRSPNLHS* 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18402844 18412633 - Vvi8g1094 Vvi8g1094 791317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1094 893 Gene3D alpha/beta hydrolase 445 891 IPR029058 -
Vvi8g1094 893 Pfam Pectinesterase 106 395 IPR000070 GO:0030599|GO:0042545
Vvi8g1094 893 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 407 - -
Vvi8g1094 893 SUPERFAMILY alpha/beta-Hydrolases 465 891 IPR029058 -
Vvi8g1094 893 Gene3D - 99 403 IPR012334 -
Vvi8g1094 893 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Vvi8g1094 893 ProSitePatterns Serine carboxypeptidases, serine active site. 592 599 IPR018202 GO:0004185
Vvi8g1094 893 SUPERFAMILY Pectin lyase-like 101 402 IPR011050 -
Vvi8g1094 893 Pfam Serine carboxypeptidase 464 885 IPR001563 GO:0004185|GO:0006508
Vvi8g1094 893 PANTHER PECTINESTERASE 14-RELATED 8 407 - -
Vvi8g1094 893 PRINTS Carboxypeptidase C serine protease (S10) family signature 578 603 IPR001563 GO:0004185|GO:0006508
Vvi8g1094 893 PRINTS Carboxypeptidase C serine protease (S10) family signature 858 871 IPR001563 GO:0004185|GO:0006508
Vvi8g1094 893 PRINTS Carboxypeptidase C serine protease (S10) family signature 530 542 IPR001563 GO:0004185|GO:0006508
Vvi8g1094 893 PRINTS Carboxypeptidase C serine protease (S10) family signature 543 553 IPR001563 GO:0004185|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1121 Vvi8g1094 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1094 K09646 - vvi:100258995 889.026