Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1095 ATGAAACGCGAGTTAGCTTTTGCATTGGAGGTTCATTCCCAATGCGGTTTAATCGGTCGGACTCGGTCGACGAAGGCTCAGACTCAGAATGAAACTATTAACTGCAATGGGGTTGCTTGGAATGAGAGTAATAAGAAGCTGAAGACCTTGAATGATGAGTTGGAGGGGAATGATTCTAGTGATCGGATTCGCGAGACCAAGAATCGATGGGATGGGGTCATCCAGTATTCGAGAAATAAGAGACTGAAGCGTTTGGAAGAGTCCAAGAATGATGAGAGAAGAACCATTGCGGAGGAGCCAAAAGATGATGAAAGCACTACCGATGAGGAGCAGAAAACTGATGAGAATGACCCTGTTGTCGTGGAGAAACCTACGGGCGGCTATTTGGTGGGGCCCATTTGTGAAGAGGAGCCGAAGAGCCAATCCCAGAAAGCTTCAATCAAGGACGAATCAAATGATGGTAGTCTGAAGTTGCAAACTGCAGGACTGATCGATGAGAGCAAGGAGATAGATATTGCGATGGAGGAGAAACTTCCAAAGCGGTTTACAAGATCAGCATTAAAATCGAAGGAGGACACTGTGGAGAGTTTGGAATCAGACTATAATTTTTGCAATTCTGTTGCCATAGGAGTTGACGAGAAGACAAATGGTGCGGTAAGATCATTAACAAGTCCAAAGAAGTTAGGACTGAAAATGTCAAAAAAGATTGCCTTGAACAAGGTTCCCTTGACAATAAGGGATCTTCTCGAGACTGGCATGCTGGAGGGATACCCTGTAACTTACGATGGTAGAAAGAAGGGCTATAGGCTTCAGGGAACTATCAAAGGCAATGGGATCTTGTGCTCATGTTCTTTGTGCAAGGGAAGCAGAGTTGTTTTGCCTTCCCAATTCGAGCTCCATGCTTGCAAATCATACAGACATGCAGCAAAGTACATTTACCTTGACAATGGTAAAAACCTTCATGATGTGTTGCATGTATGCAAGGATGCTCCTTTGGAAACATTGGAAGCAACTATTCAAAGTGCCATTGGTTCATTTCCAGTAAAACGATCTTTACCTGCAGATGAAGCTGCAAAAATGGATCCACTAGGCAATTCATGCATTAAGAGAAACAACTCACCAGCTACTTCAATTCATAGGACCAGTGAAAGAGCTAGGTTGTTGAAACCAATTCCAGTTACAAAGTCCTCTGGAAGTGCATTGTACAACTCCTCAGAAAATAAGAGTCTGGGGAAGATAACAAAAAAAGATCAGAGGTTGCACAGATTAGTTTTTGAGGAAGGCGGGTTACCTGATGGAACTGAAGTTGCCTACTATGCAGGCGGAAAGAAATTGCTGGATGGTTATAAAAAAGGCTTTGGAATATTTTGTTGGTGCTGCCACTGTGAGGTCAGTGCCTCACAGTTTGAAGCTCATGCAGGTTGGGCCTCACGTAAAAAACCCTATTCATACATTTACACATCAAATGGAGTGTCACTACATGAATTGGCAATTTCTCTATCAAAAGGCCGTAAATATTCTGCTAGGGATAATGACGACCTCTGCAGTATTTGTGGAGATGGTGGCAATCTTTTGCTTTGTGATGGATGCCCTAGGGCCTTTCACAGAGTATGTGCATCTCTACCAAGCATTCCCCAAGATGACTGGTACTGTCGATATTGCCAGAACATGTTCCAACGAGAAAAGTTTGTGGAGCATAACGCCAATGCTGTAGCAGCTGGCAGGGTTTCAGGAGTGGATCCCATAGAACAAATAACCAAGCGATGCATTCGTATTGTTAACCCAGAAGCTGAAGTTAGTGCATGCGTGTTATGCAGAGGTTATGACTTCAGTAAGTCAGGATTTGGTCCACGCACGATTATACTGTGTGACCAGTGTGAAAAGGAGTTTCATATTGGCTGTTTGAGGGACCATAAGATGCAAGATTTAAAGGAATTACCCAGTGGGAAATGGTTTTGTTGCTTGGAATGCATAAGGATCCATTCCGCTTTGCAGAAGCTGCATGTTCGTGGAGAGGAGAAGCTTCCAGACTCTCTGCTGAATGTTATAAAGGAGAAGCATGAGAGGAAAGGTTTAGAAAGCATTGCTGATTATAATGTAAGATGGAGGCTCCTTAGTGGCAAACTTGCTTCTCCTGAAACTAGGGTGTTGCTCTCTGAGGCCGTTGCTATCTTCCATGATCGCTTTGACCCAATAATAGATTCAGTGACTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTAAGGGGTCAGGATTTCAGTGGATTGTATTGTGCAGTCATAACAGTCAATTCACATGTTGTTTCGGCTGGAATCCTTCGAGTGTTCGGACAGGAAGTGGCAGAGCTCCCTCTGGTTGCAACTAGTGTTGATAACCAAGGCAGGGGCTACTTTCAGATATTGTTCTCCTGCATTGAAAAACTTCTGGCCTTTTTAAATGTGCGGAGCTTTGTGCTTCCGGCTGCTGAAGAAGCAGAGTGTATATGGACTAAGAAATTTGGCTTTAAGAAGATAACGCCAGACCAGCTTAGCGAGTACAGGAAAAGCTTCTATCAGATGATAAGCTTTCAAGGGACATGTATGCTAGAAAAGGGGGTTCCTGAGTGGCGGAGGATTATCCATCAAAAATGA 2640 43.79 MKRELAFALEVHSQCGLIGRTRSTKAQTQNETINCNGVAWNESNKKLKTLNDELEGNDSSDRIRETKNRWDGVIQYSRNKRLKRLEESKNDERRTIAEEPKDDESTTDEEQKTDENDPVVVEKPTGGYLVGPICEEEPKSQSQKASIKDESNDGSLKLQTAGLIDESKEIDIAMEEKLPKRFTRSALKSKEDTVESLESDYNFCNSVAIGVDEKTNGAVRSLTSPKKLGLKMSKKIALNKVPLTIRDLLETGMLEGYPVTYDGRKKGYRLQGTIKGNGILCSCSLCKGSRVVLPSQFELHACKSYRHAAKYIYLDNGKNLHDVLHVCKDAPLETLEATIQSAIGSFPVKRSLPADEAAKMDPLGNSCIKRNNSPATSIHRTSERARLLKPIPVTKSSGSALYNSSENKSLGKITKKDQRLHRLVFEEGGLPDGTEVAYYAGGKKLLDGYKKGFGIFCWCCHCEVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIVNPEAEVSACVLCRGYDFSKSGFGPRTIILCDQCEKEFHIGCLRDHKMQDLKELPSGKWFCCLECIRIHSALQKLHVRGEEKLPDSLLNVIKEKHERKGLESIADYNVRWRLLSGKLASPETRVLLSEAVAIFHDRFDPIIDSVTGRDLIPAMVYGRNVRGQDFSGLYCAVITVNSHVVSAGILRVFGQEVAELPLVATSVDNQGRGYFQILFSCIEKLLAFLNVRSFVLPAAEEAECIWTKKFGFKKITPDQLSEYRKSFYQMISFQGTCMLEKGVPEWRRIIHQK* 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18415969 18425901 - Vvi8g1095 Vvi8g1095 791318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1095 879 Pfam Tify domain binding domain 272 325 IPR032308 -
Vvi8g1095 879 Pfam Tify domain binding domain 448 498 IPR032308 -
Vvi8g1095 879 SMART PHD_3 514 555 IPR001965 -
Vvi8g1095 879 SMART PHD_3 601 658 IPR001965 -
Vvi8g1095 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 584 IPR013083 -
Vvi8g1095 879 Pfam PHD-finger 515 556 IPR019787 -
Vvi8g1095 879 ProSiteProfiles Zinc finger PHD-type profile. 512 557 IPR019787 -
Vvi8g1095 879 CDD PHD1_AIRE 514 554 - -
Vvi8g1095 879 MobiDBLite consensus disorder prediction 88 154 - -
Vvi8g1095 879 SUPERFAMILY FYVE/PHD zinc finger 598 656 IPR011011 -
Vvi8g1095 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 660 IPR013083 -
Vvi8g1095 879 PANTHER AUTOIMMUNE REGULATOR 1 375 - -
Vvi8g1095 879 PANTHER AUTOIMMUNE REGULATOR 385 874 - -
Vvi8g1095 879 ProSitePatterns Zinc finger PHD-type signature. 515 554 IPR019786 -
Vvi8g1095 879 Gene3D - 706 866 - -
Vvi8g1095 879 SUPERFAMILY FYVE/PHD zinc finger 502 556 IPR011011 -
Vvi8g1095 879 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 757 842 IPR016181 -
Vvi8g1095 879 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 385 874 - -
Vvi8g1095 879 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 375 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1116 Vvi8g1095 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15106 PF16135 TDBD 4.40E-13 No_clan Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1095 - - vvi:100248757 1759.19