Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1095 ATGAAACGCGAGTTAGCTTTTGCATTGGAGGTTCATTCCCAATGCGGTTTAATCGGTCGGACTCGGTCGACGAAGGCTCAGACTCAGAATGAAACTATTAACTGCAATGGGGTTGCTTGGAATGAGAGTAATAAGAAGCTGAAGACCTTGAATGATGAGTTGGAGGGGAATGATTCTAGTGATCGGATTCGCGAGACCAAGAATCGATGGGATGGGGTCATCCAGTATTCGAGAAATAAGAGACTGAAGCGTTTGGAAGAGTCCAAGAATGATGAGAGAAGAACCATTGCGGAGGAGCCAAAAGATGATGAAAGCACTACCGATGAGGAGCAGAAAACTGATGAGAATGACCCTGTTGTCGTGGAGAAACCTACGGGCGGCTATTTGGTGGGGCCCATTTGTGAAGAGGAGCCGAAGAGCCAATCCCAGAAAGCTTCAATCAAGGACGAATCAAATGATGGTAGTCTGAAGTTGCAAACTGCAGGACTGATCGATGAGAGCAAGGAGATAGATATTGCGATGGAGGAGAAACTTCCAAAGCGGTTTACAAGATCAGCATTAAAATCGAAGGAGGACACTGTGGAGAGTTTGGAATCAGACTATAATTTTTGCAATTCTGTTGCCATAGGAGTTGACGAGAAGACAAATGGTGCGGTAAGATCATTAACAAGTCCAAAGAAGTTAGGACTGAAAATGTCAAAAAAGATTGCCTTGAACAAGGTTCCCTTGACAATAAGGGATCTTCTCGAGACTGGCATGCTGGAGGGATACCCTGTAACTTACGATGGTAGAAAGAAGGGCTATAGGCTTCAGGGAACTATCAAAGGCAATGGGATCTTGTGCTCATGTTCTTTGTGCAAGGGAAGCAGAGTTGTTTTGCCTTCCCAATTCGAGCTCCATGCTTGCAAATCATACAGACATGCAGCAAAGTACATTTACCTTGACAATGGTAAAAACCTTCATGATGTGTTGCATGTATGCAAGGATGCTCCTTTGGAAACATTGGAAGCAACTATTCAAAGTGCCATTGGTTCATTTCCAGTAAAACGATCTTTACCTGCAGATGAAGCTGCAAAAATGGATCCACTAGGCAATTCATGCATTAAGAGAAACAACTCACCAGCTACTTCAATTCATAGGACCAGTGAAAGAGCTAGGTTGTTGAAACCAATTCCAGTTACAAAGTCCTCTGGAAGTGCATTGTACAACTCCTCAGAAAATAAGAGTCTGGGGAAGATAACAAAAAAAGATCAGAGGTTGCACAGATTAGTTTTTGAGGAAGGCGGGTTACCTGATGGAACTGAAGTTGCCTACTATGCAGGCGGAAAGAAATTGCTGGATGGTTATAAAAAAGGCTTTGGAATATTTTGTTGGTGCTGCCACTGTGAGGTCAGTGCCTCACAGTTTGAAGCTCATGCAGGTTGGGCCTCACGTAAAAAACCCTATTCATACATTTACACATCAAATGGAGTGTCACTACATGAATTGGCAATTTCTCTATCAAAAGGCCGTAAATATTCTGCTAGGGATAATGACGACCTCTGCAGTATTTGTGGAGATGGTGGCAATCTTTTGCTTTGTGATGGATGCCCTAGGGCCTTTCACAGAGTATGTGCATCTCTACCAAGCATTCCCCAAGATGACTGGTACTGTCGATATTGCCAGAACATGTTCCAACGAGAAAAGTTTGTGGAGCATAACGCCAATGCTGTAGCAGCTGGCAGGGTTTCAGGAGTGGATCCCATAGAACAAATAACCAAGCGATGCATTCGTATTGTTAACCCAGAAGCTGAAGTTAGTGCATGCGTGTTATGCAGAGGTTATGACTTCAGTAAGTCAGGATTTGGTCCACGCACGATTATACTGTGTGACCAGTGTGAAAAGGAGTTTCATATTGGCTGTTTGAGGGACCATAAGATGCAAGATTTAAAGGAATTACCCAGTGGGAAATGGTTTTGTTGCTTGGAATGCATAAGGATCCATTCCGCTTTGCAGAAGCTGCATGTTCGTGGAGAGGAGAAGCTTCCAGACTCTCTGCTGAATGTTATAAAGGAGAAGCATGAGAGGAAAGGTTTAGAAAGCATTGCTGATTATAATGTAAGATGGAGGCTCCTTAGTGGCAAACTTGCTTCTCCTGAAACTAGGGTGTTGCTCTCTGAGGCCGTTGCTATCTTCCATGATCGCTTTGACCCAATAATAGATTCAGTGACTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTAAGGGGTCAGGATTTCAGTGGATTGTATTGTGCAGTCATAACAGTCAATTCACATGTTGTTTCGGCTGGAATCCTTCGAGTGTTCGGACAGGAAGTGGCAGAGCTCCCTCTGGTTGCAACTAGTGTTGATAACCAAGGCAGGGGCTACTTTCAGATATTGTTCTCCTGCATTGAAAAACTTCTGGCCTTTTTAAATGTGCGGAGCTTTGTGCTTCCGGCTGCTGAAGAAGCAGAGTGTATATGGACTAAGAAATTTGGCTTTAAGAAGATAACGCCAGACCAGCTTAGCGAGTACAGGAAAAGCTTCTATCAGATGATAAGCTTTCAAGGGACATGTATGCTAGAAAAGGGGGTTCCTGAGTGGCGGAGGATTATCCATCAAAAATGA 2640 43.79 MKRELAFALEVHSQCGLIGRTRSTKAQTQNETINCNGVAWNESNKKLKTLNDELEGNDSSDRIRETKNRWDGVIQYSRNKRLKRLEESKNDERRTIAEEPKDDESTTDEEQKTDENDPVVVEKPTGGYLVGPICEEEPKSQSQKASIKDESNDGSLKLQTAGLIDESKEIDIAMEEKLPKRFTRSALKSKEDTVESLESDYNFCNSVAIGVDEKTNGAVRSLTSPKKLGLKMSKKIALNKVPLTIRDLLETGMLEGYPVTYDGRKKGYRLQGTIKGNGILCSCSLCKGSRVVLPSQFELHACKSYRHAAKYIYLDNGKNLHDVLHVCKDAPLETLEATIQSAIGSFPVKRSLPADEAAKMDPLGNSCIKRNNSPATSIHRTSERARLLKPIPVTKSSGSALYNSSENKSLGKITKKDQRLHRLVFEEGGLPDGTEVAYYAGGKKLLDGYKKGFGIFCWCCHCEVSASQFEAHAGWASRKKPYSYIYTSNGVSLHELAISLSKGRKYSARDNDDLCSICGDGGNLLLCDGCPRAFHRVCASLPSIPQDDWYCRYCQNMFQREKFVEHNANAVAAGRVSGVDPIEQITKRCIRIVNPEAEVSACVLCRGYDFSKSGFGPRTIILCDQCEKEFHIGCLRDHKMQDLKELPSGKWFCCLECIRIHSALQKLHVRGEEKLPDSLLNVIKEKHERKGLESIADYNVRWRLLSGKLASPETRVLLSEAVAIFHDRFDPIIDSVTGRDLIPAMVYGRNVRGQDFSGLYCAVITVNSHVVSAGILRVFGQEVAELPLVATSVDNQGRGYFQILFSCIEKLLAFLNVRSFVLPAAEEAECIWTKKFGFKKITPDQLSEYRKSFYQMISFQGTCMLEKGVPEWRRIIHQK* 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18415969 18425901 - Vvi8g1095 Vvi8g1095 791318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1095 879 Pfam Tify domain binding domain 272 325 IPR032308 -
Vvi8g1095 879 Pfam Tify domain binding domain 448 498 IPR032308 -
Vvi8g1095 879 SMART PHD_3 514 555 IPR001965 -
Vvi8g1095 879 SMART PHD_3 601 658 IPR001965 -
Vvi8g1095 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 584 IPR013083 -
Vvi8g1095 879 Pfam PHD-finger 515 556 IPR019787 -
Vvi8g1095 879 ProSiteProfiles Zinc finger PHD-type profile. 512 557 IPR019787 -
Vvi8g1095 879 CDD PHD1_AIRE 514 554 - -
Vvi8g1095 879 MobiDBLite consensus disorder prediction 88 154 - -
Vvi8g1095 879 SUPERFAMILY FYVE/PHD zinc finger 598 656 IPR011011 -
Vvi8g1095 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 660 IPR013083 -
Vvi8g1095 879 PANTHER AUTOIMMUNE REGULATOR 1 375 - -
Vvi8g1095 879 PANTHER AUTOIMMUNE REGULATOR 385 874 - -
Vvi8g1095 879 ProSitePatterns Zinc finger PHD-type signature. 515 554 IPR019786 -
Vvi8g1095 879 Gene3D - 706 866 - -
Vvi8g1095 879 SUPERFAMILY FYVE/PHD zinc finger 502 556 IPR011011 -
Vvi8g1095 879 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 757 842 IPR016181 -
Vvi8g1095 879 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 385 874 - -
Vvi8g1095 879 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1095 - - - vvi:100248757 1759.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g1116 Vvi8g1095 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02472 . . . . . . . . Sed04g1413 . . . . . . . . Bhi11g02031 Tan08g1823 Cmetu04g2275 . . . . . . . . . . . Lsi03g01970 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g89 ECH 1 558 PHD Transcription Factor Family AT1G05380 51.0 1.0e-172 604.7
Vvi8g1095 ECH 234 869 PHD Transcription Factor Family AT2G36720 50.8 5.8e-204 708.4
Vvi8g694 . 25 841 PHD Transcription Factor Family AT3G53680 56.6 8.1e-260 893.6
Vvi6g395 ECH 260 399 PHD Transcription Factor Family AT3G53680 53.2 1.4e-38 158.7
Vvi1g555 . 10 647 PHD Transcription Factor Family AT5G22260 51.7 2.5e-187 652.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15106 PF16135 TDBD 4.40E-13 No_clan Vvi TR