Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1100 ATGTCTCCTGCAATGGGAATAACAACTGAGAGTAAGCAGGAGAATGATCCCTTAGATACCCACTACCAGAATGGAGTGAAGCACCTTTGTGAAAATGGGATTTCAAAAGTTCCTAACAAGTACATATTGCCTGTCTCTGAACGACCCAGTTCGGATAATGGAGTACCCAATGCAGCCGAGCTTAGTCTGAATTTGCCCGTAATCGATTTTGCTGAGTTACAAGGTTCCAATAGGTCCCAAGTCCTCAAGTCTATCGCTAATGCTTGTGAAGAATATGGGTTTTTTCAGTTGGTAAATCATGGTATTCCCAGCGATATCATCAGCAGCATGATTGACGTGAGCCAAAGGTTCTTTGATCTCCCCATGGAAGAAAGAGCCAAGTACATGTCTGCAGATATGTGCTCGCCAGTTCGATATGGAACTAGCTTCAACCAGACCAAAGATGGTGTTTTTTGTTGGCGAGACTTCTTGAAGCTAATGTGTCATCCCTTATCAGATGTCCTTCCTCATTGGCCATCTTCTCCCGTGGACTTTAGGAAATTGGCGGTTACTTACTCCAAAGAAACCAAGTACTTGTTTCTAACGCTAATGGAGGCCATCCTAGAGAGCTTGGGGCTATATGATATTCAGGGTCTACAGATACAGTTCAAAGGAAAATGGTTAACAGTTGAACCACTTGCCAATTCTTTTGTCATCAACATCGGCGACCACCTTGAGATCTTTAGCAATGGGAAGTACAAGAGTGTGTTGCATAGAGTAGTTGTGAATTCAACAAAGCCTCGTATTTCGGTCGCTTCTTTGCACAGTCTTCCCTTCAAGTGCATGGTAAAACCGGCCCCCCAGCTCATCAGCCAAGAAAATCCAAGGCATTACAAGGATACAGATTTTGCTAGCTTTCTGGACTACATTTCTTCCTGTGAGCCCAAGAGGAAGAATTTCCTGGAGTCTCGGAAATTGAGTTGA 963 43.82 MSPAMGITTESKQENDPLDTHYQNGVKHLCENGISKVPNKYILPVSERPSSDNGVPNAAELSLNLPVIDFAELQGSNRSQVLKSIANACEEYGFFQLVNHGIPSDIISSMIDVSQRFFDLPMEERAKYMSADMCSPVRYGTSFNQTKDGVFCWRDFLKLMCHPLSDVLPHWPSSPVDFRKLAVTYSKETKYLFLTLMEAILESLGLYDIQGLQIQFKGKWLTVEPLANSFVINIGDHLEIFSNGKYKSVLHRVVVNSTKPRISVASLHSLPFKCMVKPAPQLISQENPRHYKDTDFASFLDYISSCEPKRKNFLESRKLS* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18459915 18461377 - Vvi8g1100 Vvi8g1100 791323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1100 320 Gene3D - 17 208 IPR027443 -
Vvi8g1100 320 Pfam 2OG-Fe(II) oxygenase superfamily 208 268 IPR044861 -
Vvi8g1100 320 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 20 207 - -
Vvi8g1100 320 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 208 318 - -
Vvi8g1100 320 Pfam non-haem dioxygenase in morphine synthesis N-terminal 65 166 IPR026992 -
Vvi8g1100 320 SUPERFAMILY Clavaminate synthase-like 24 303 - -
Vvi8g1100 320 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-RELATED 208 318 - -
Vvi8g1100 320 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-RELATED 20 207 - -
Vvi8g1100 320 Gene3D - 209 318 IPR027443 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1100 - - qsu:111984914 461.07