Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1112 ATGCATTTGTTTTATTCTAAATATATCCATGCTGTTCATTTAATTTTAGTTAGATTTTTGTTCGAAAATGAATGTATTTATTTCCTAGCCCAGAATCTAAAGACATTCACCTCAAAGAGAGAAGAAAAAAAAAAAAAAACTACAAGTCCCTTGGACTCTCAAAGGCATTGCCAAACAAAGTTTTTAGGTACCATGGCATTGCCTTTGCGAGCCCTCTTGTCATCATTGCTGCCGCTGCTTTTGCTCCTGCTGTCTCATGATGTCCATGCCAATGGATGGACAGGGAATGCACGTCATGCATTGCTTTCCAAGCACCATAGACCAAAGTTCAAGCCTGGCCCTTGGCATAATGCTCATGCCACCTTTTATGGAGGAGCCGATGCCTCACAAACAATGGGGGGAGCTTGTGGCTATGGAGACCTGCATAAGCAAGGGTATGGGGTTCAAACCGCAGCGTTGAGCACGGTTCTCTTCAATGGTGGGCAGGCATGTGGGGCTTGTTTCGAAATCAAATGTGTGGATGATCCACAGGGGTGCAAGCGAGGGCAGGCATCACTCATGGTTACAGCCACCAACCTGTGCCCTCCAAGTAGCAATGGAGGATGGTGTAATCCACCTCGTGAACACTTTGATCTCTCCCAGCCTGCATTTCTTCAGATTGCCGAGTACAAGGCTGGCATTGTTCCCGTTCAGTATCGCAGGGTCCCATGCAAGAAGAAAGGAGGGATTCGATTCACAATATCTGGGAATCCTTACTTCAACCTTGTGTTTATATGGAATGTTGGAGGAGCTGGAGATATCACGAGTGTGCAGGTGAAGGGCGATCGCAAACTGAAATGGACAACACTCAAGCGTAATTGGGGTCAGAACTGGGAGACTGACGCCATGTTGGTTGGGGAATCACTCACCTTCCGAGTCAGAGTAAGTGATGGTAGATACTCTACCTCCTGGCATATCGCCCCAAAGAACTGGCAGTTCGGCCAGACCTTTGAAGGCAAGAACTTCAAGTAG 1011 46.98 MHLFYSKYIHAVHLILVRFLFENECIYFLAQNLKTFTSKREEKKKKTTSPLDSQRHCQTKFLGTMALPLRALLSSLLPLLLLLLSHDVHANGWTGNARHALLSKHHRPKFKPGPWHNAHATFYGGADASQTMGGACGYGDLHKQGYGVQTAALSTVLFNGGQACGACFEIKCVDDPQGCKRGQASLMVTATNLCPPSSNGGWCNPPREHFDLSQPAFLQIAEYKAGIVPVQYRRVPCKKKGGIRFTISGNPYFNLVFIWNVGGAGDITSVQVKGDRKLKWTTLKRNWGQNWETDAMLVGESLTFRVRVSDGRYSTSWHIAPKNWQFGQTFEGKNFK* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18623546 18625680 + Vvi8g1112 Vvi8g1112 791335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1112 336 PANTHER EXPANSIN-A15 71 336 IPR002963 GO:0009664
Vvi8g1112 336 PANTHER EXPANSIN-A32 71 336 - -
Vvi8g1112 336 SUPERFAMILY PHL pollen allergen 239 332 IPR036749 -
Vvi8g1112 336 SUPERFAMILY Barwin-like endoglucanases 114 260 IPR036908 -
Vvi8g1112 336 Pfam Lytic transglycolase 150 232 IPR009009 -
Vvi8g1112 336 SMART dpbb_1 150 232 IPR007112 -
Vvi8g1112 336 PRINTS Expansin/Lol pI family signature 114 129 IPR007118 GO:0005576
Vvi8g1112 336 PRINTS Expansin/Lol pI family signature 132 150 IPR007118 GO:0005576
Vvi8g1112 336 PRINTS Expansin/Lol pI family signature 154 172 IPR007118 GO:0005576
Vvi8g1112 336 PRINTS Expansin/Lol pI family signature 225 241 IPR007118 GO:0005576
Vvi8g1112 336 PRINTS Expansin/Lol pI family signature 280 294 IPR007118 GO:0005576
Vvi8g1112 336 PRINTS Expansin/Lol pI family signature 318 332 IPR007118 GO:0005576
Vvi8g1112 336 Gene3D - 100 238 IPR036908 -
Vvi8g1112 336 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 133 242 IPR007112 -
Vvi8g1112 336 PRINTS Expansin signature 145 159 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 172 183 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 186 196 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 200 217 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 217 230 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 241 253 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 289 310 IPR002963 GO:0009664
Vvi8g1112 336 PRINTS Expansin signature 318 334 IPR002963 GO:0009664
Vvi8g1112 336 Gene3D - 239 335 IPR036749 -
Vvi8g1112 336 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 252 332 IPR007117 -
Vvi8g1112 336 Pfam Expansin C-terminal domain 243 321 IPR007117 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1112 - - vvi:100255435 555.058