Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1115 ATGGACAGAGACTGGGGCTCGAAGCCAGGGACCGGTGGCGCCGCCTCCGCCCAGAATGAAGCCATCGACCGGAGGGAGCGTCTCAGAAGGCTTGCTCTCGAGACTATTGATCTCGCCAAAGATCCCTATTTCATGCGTAATCATCTCGGAAGCTATGAGTGTAAGCTTTGCCTGACATTGCACAACAACGAGGGCAATTATTTGGCCCACACACAAGGGAAGAGGCATCAGACGAATTTGGCCAAGAGAGCTGCTCGTGAGGCCAAAGAGGCGCCTGCGCAGCCACAGCCCCACAAGCGCAAAGTCTCCGTACGCAAGACAGTTAAAATTGGTAGGCCCGGGTATCGGGTAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATGTCTTCTTTTGAGCAGAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAAACCAAGCCACCAGAGGCAAACAAGCCTCAGCCTGCCTCTGCAGCTAATGGTACAACTGCTCCTGGGACTCCCACCAGGTGCAACAATTGCTAA 726 49.72 MDRDWGSKPGTGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPASAANGTTAPGTPTRCNNC* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18670796 18688484 - Vvi8g1115 Vvi8g1115 791338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1115 241 MobiDBLite consensus disorder prediction 215 241 - -
Vvi8g1115 241 Gene3D - 93 218 - -
Vvi8g1115 241 Gene3D Classic Zinc Finger 46 89 - -
Vvi8g1115 241 SMART CactinC_cactus_3 89 217 - -
Vvi8g1115 241 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Vvi8g1115 241 MobiDBLite consensus disorder prediction 222 241 - -
Vvi8g1115 241 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Vvi8g1115 241 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g1115 241 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Vvi8g1115 241 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vvi8g1115 241 Pfam Zinc-finger of C2H2 type 52 76 - -
Vvi8g1115 241 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 232 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1115 K12826 - vvi:100245136 458.759