Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1122 ATGCCGATCCGCAACATCGCCTTTGGAAGGCCCGAGGAGGCGACTCGACCCGACGCTCTTAAAGCGGCGTTTGCTGAGTTTATATGTACCTTGATTTTCGTGTTCGCCGGCGAAGGTTCCGGCATGGCCTTTAACAAACTCACTGACAACGGTTCCACCACTCCCGCTGGCCTCGTTGCCGCCTCTCTGGCTCACGCATTCGCTCTCTTTGTTGCCCTTCTTGGGTCCACCGTAGCTTGCTTGCTACTTAAGTTTTCCACCAACGGCATGACCACCAGCGCCTTCTCTCTGTCTTCAGGAGTGACAGTGTGGAACGCGTTTGTTTTCGAGATCGTGATGACCTTCGGGCTGGTGTACACAGTCTACGCCACAGCCATTGATCCAAAGAAGGGCAATTTGGGAATTATTGCACCGATTGCCATCGGTTTTATCGTGGGTGCTAACATTCTGGCAGGTGGGGCCTTCGACGGTGCCTCAATGAACCCAGCAGTATCATTTGGGCCTGCCTTGGTGAGCTGGACCTGGACCAACCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGAGGGCTTGCTGGACTTGTGTACGAGGTCTTCTTCATCAGCCACACTCACGAGCAGCTCCCCTCCACAGACTACTGA 642 55.3 MPIRNIAFGRPEEATRPDALKAAFAEFICTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAASLAHAFALFVALLGSTVACLLLKFSTNGMTTSAFSLSSGVTVWNAFVFEIVMTFGLVYTVYATAIDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWTWTNHWVYWAGPLIGGGLAGLVYEVFFISHTHEQLPSTDY* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18763852 18764915 + Vvi8g1122 Vvi8g1122 791345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1122 213 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1122 213 PRINTS Major intrinsic protein family signature 109 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1122 213 PRINTS Major intrinsic protein family signature 142 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1122 213 PRINTS Major intrinsic protein family signature 179 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1122 213 SUPERFAMILY Aquaporin-like 13 208 IPR023271 -
Vvi8g1122 213 Gene3D Glycerol uptake facilitator protein. 73 213 IPR023271 -
Vvi8g1122 213 Gene3D Glycerol uptake facilitator protein. 4 72 IPR023271 -
Vvi8g1122 213 Pfam Major intrinsic protein 73 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1122 213 Pfam Major intrinsic protein 14 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g1122 213 PANTHER AQUAPORIN-8 73 213 IPR034294 -
Vvi8g1122 213 PANTHER AQUAPORIN-8 1 72 IPR034294 -
Vvi8g1122 213 PANTHER AQUAPORIN TIP1-1 1 72 - -
Vvi8g1122 213 PANTHER AQUAPORIN TIP1-1 73 213 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1122 K09873 - vvi:100233004 382.104