Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1147 ATGACAATTGGGTCTATTGGAGCCATCGTACATGGATCTTCTCTCCCAATTTTCCTTCGTTTTTTCGCCGATCTCGTCAATTCCTTCGGGTCTAATGCCAACAATATTGATAAGATGATGCAAGAAGTTCTCAAGTATGCATTTTACTTCCTTGTTGTGGGTGCTGCAATATGGGCGTCTTCATGGGCAGAGATATCGTGTTGGATGTGGACCGGAGAGAGGCAATCCACCAAGATGAGGATCAAGTACCTAGAAGCGGCTTTGAACCAGGACATTCAGTTTTTTGACACCGAGGTTCGGACCTCCGACGTCGTTTTTGCCGTTAATACCGATGCAGTGATGGTTCAAGATGCCATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCAACATTTGTGTCTGGATTTGTAGTGGGTTTCACTGCTGTGTGGCAATTGGCACTTGTCACTCTTGCTGTGGTTCCTCTGATTGCTGTAATTGGCGGCATCCACACCGCCACATTGGCCAAGCTCTCTGCCAAGAGCCAGGAGGCTCTTTCAGAGGCGGGGAACATTGCAGAACAGACGATAGTTCAAATTCGGGTTGTTTTCGCATTTGTTGGAGAATCCAGAGCATTACAAGCCTACTCCGCAGCCTTGAGGATCTCTCAGAGGCTTGGTTACAAGAGCGGATTTTCCAAGGGAATGGGATTGGGTGCAACATACTTCACTGTTTTCTGTTGTTATGCTCTTCTGCTCTGGTATGGGGGTTATCTTGTTCGGCACCATTACACCAATGGAGGACTAGCCATCGCCACCATGTTCTCTGTCATGCTTGGCGGACTCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAGAGAAATGGCGAAACGGGTCTGGAATTGGAATCAGTTACAGGACAAGTAGAGCTGAAAAATGTAGATTTCTCCTACCCATCAAGGCCAGAGGTTCGGATCCTCAGTGATTTTTCCCTAAACGTCCCAGCCGGAAAGACCATCGCCCTTGTAGGAAGCAGTGGCTCTGGAAAGAGCACTGTGGTCTCTCTCATTGAGAGATTCTATGATCCCACCTCAGGACAAGTTCTGCTAGATGGGCATGACATAAAGACATTAAAGCTGAGGTGGCTGAGGCAACAAATTGGGCTAGTGAGCCAAGAGCCTGCTCTGTTTGCTACCACCATTAAAGAAAATATGCTCTTGGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGGCGAAGTTAGGCATGAATCTTGCACAGAGGGTGCAATGGGCAACATGGCCTCAGTCAACAGTACATAGGGGTAAAAGGCATTATATCAATGACACTGTAGGGGAGAGAGGATTCCAGCTCTCAGGAGGGCAGAAGCAAAGAATAGCTATAGCAAGAGCAATGCTTAAGAATCCAGCAATCCTGCTCTTAGATGAGGCAACAAGCGCATTGGACTCTGAGTCAGAAAAGCTAGTGCAAGAGGCCCTTGACCGTTTCATGATCGGGAGGACAACTCTTGTCATTGCCCACCGACTCTCAACCATTCGCAAGGCTGACCTTGTAGCTGTACTCCAGCAGGGGAGTGTCTCTGAGATTGGAACCCATGATGAGCTCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGGCCTTCTAGTGCTAGAAATTCAGTAAGCTCACCAATAATTGCCAGGAACTCCTCCTATGGTCGATCACCTTATTCACGCCGGCTATCTGACTTCTCTACTTCTGATTTTAGTCTTTCCCTTGATGCATCACATCCCAATTATCGCCTGGAAAAGCTTGCCTTCAAGGAGCAAGCCAGTTCCTTCTGGCGCCTTGCAAAAATGAACTCTCCAGAATGGGTTTATGCTTTATTTGGTACTATAGGCTCTGTTGTTTGTGGCTCCATTAGCGCCTTCTTTGCCTATGTTCTGAGTGCTGTCCTTAGCGTGTATTACAATCAGAACCATGCTTACATGAGCAAACAAATTGGAAAGTATTGCTATCTGTTAATTGGGGTTTCGTCGGCTGCGCTTCTCTTCAACACACTGCAACATTTCTTTTGGGATGTAGTGGGAGAAAATCTTACAAAACGGGTGAGAGAGAAAATGTTGGCAGCAGTGCTGAAGAATGAAATGGCATGGTTTGATCAGGAAGAGAATGAGAGTGCTAGGATTGCTGCTAGACTGGCTCTTGATGCCAATAATGTTAGGTCAGCCATTGGCGATCGGATTTCAGTGATCATGCAAAACTCAGCACTCATGCTAGTTGCCTGCACTGCAGGGTTTGTTTTACAGTGGCGCCTTGCCCTTGTCCTCATAGCCGTCTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGCAAGGTTTCTCTGGAGATCTAGAAGGTGCCCATGCCAAGGCTACACAATTAGCAGGAGAAGCCATAGCCAATGTGAGAACAGTTGCTGCATTCAATTCAGAAGCAAAAATTGTGGGTCTTTTCTCCACCAACCTCCAAACCCCACTACGGCGCTGTTTTTGGAAGGGACAGATAGCTGGAAGTGGATATGGGATAGCCCAATTCTTACTTTATGCTTCCTATGCTCTCGGTCTTTGGTATGCCTCCTGGCTTGTGAAGCATGGGATCTCTGATTTCTCAAAGACAATCAGGGGTGGCCGAGCCATGCGATCAGTGTTTGACCTTCTTGACCGCAAAACTGAAATTGAGCCCGATGATCCAGATGCCATTCCACAGGCAAGACTCTTGCGCTTGACATTAGAAAATACAATCTCAAGTCATTGCGAAGGCACATAG 3000 47.03 MTIGSIGAIVHGSSLPIFLRFFADLVNSFGSNANNIDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAVNTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTATLAKLSAKSQEALSEAGNIAEQTIVQIRVVFAFVGESRALQAYSAALRISQRLGYKSGFSKGMGLGATYFTVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMLGGLALGQSAPSMSAFAKAKVAAAKIFRIIDHKPNIERNGETGLELESVTGQVELKNVDFSYPSRPEVRILSDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENMLLGRPDATLVEIEEAARVANAYSFIVKLPEGFDTQAKLGMNLAQRVQWATWPQSTVHRGKRHYINDTVGERGFQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQETAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWVYALFGTIGSVVCGSISAFFAYVLSAVLSVYYNQNHAYMSKQIGKYCYLLIGVSSAALLFNTLQHFFWDVVGENLTKRVREKMLAAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIMQNSALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMQGFSGDLEGAHAKATQLAGEAIANVRTVAAFNSEAKIVGLFSTNLQTPLRRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRGGRAMRSVFDLLDRKTEIEPDDPDAIPQARLLRLTLENTISSHCEGT* 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18985318 18992118 + Vvi8g1147 Vvi8g1147 791370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1147 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 597 IPR027417 -
Vvi8g1147 999 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 943 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi8g1147 999 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 1 457 - -
Vvi8g1147 999 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 487 952 - -
Vvi8g1147 999 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 951 989 - -
Vvi8g1147 999 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 325 593 IPR003439 GO:0005524
Vvi8g1147 999 SUPERFAMILY ABC transporter transmembrane region 2 309 IPR036640 GO:0005524|GO:0016021
Vvi8g1147 999 SMART AAA_5 352 570 IPR003593 -
Vvi8g1147 999 Gene3D - 315 456 IPR027417 -
Vvi8g1147 999 Gene3D - 486 597 IPR027417 -
Vvi8g1147 999 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 286 - -
Vvi8g1147 999 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524
Vvi8g1147 999 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 3 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi8g1147 999 CDD ABC_MTABC3_MDL1_MDL2 325 596 - -
Vvi8g1147 999 Gene3D ABC transporter type 1, transmembrane domain 1 314 IPR036640 GO:0005524|GO:0016021
Vvi8g1147 999 Gene3D ABC transporter type 1, transmembrane domain 598 611 IPR036640 GO:0005524|GO:0016021
Vvi8g1147 999 Gene3D ABC transporter type 1, transmembrane domain 665 975 IPR036640 GO:0005524|GO:0016021
Vvi8g1147 999 Pfam ABC transporter transmembrane region 2 273 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi8g1147 999 Pfam ABC transporter transmembrane region 690 947 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi8g1147 999 CDD ABC_6TM_Pgp_ABCB1_D2_like 678 970 - -
Vvi8g1147 999 Pfam ABC transporter 343 524 IPR003439 GO:0005524
Vvi8g1147 999 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 951 989 IPR039421 -
Vvi8g1147 999 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 487 952 IPR039421 -
Vvi8g1147 999 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 457 IPR039421 -
Vvi8g1147 999 SUPERFAMILY ABC transporter transmembrane region 676 973 IPR036640 GO:0005524|GO:0016021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1147 K05658 - vvi:100262262 1749.18