Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi8g1148 | ATGGGCGGAAAGTGCCCTAGCCGGAAGGTTAAGAAGAGAAGATATTCTCACAAAACGGCTCGACGTGACAAATTCCTCCTCAAAGATATCCTTTTATCTACTTTCTCAATCCTTAACAAGCCAGAGGGTGAGAAGAAGCCCTTGCCCGTTGACGAAGATTTACCTGGGATGGGCCAATACTACTGCTTGCACTGCGATCGGTACTTTGCGAATGTGGCGGTCAGGGATGAACATTTCAAGACGAAGCGTCACAAGAAGCGTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATTTGA | 363 | 47.66 | MGGKCPSRKVKKRRYSHKTARRDKFLLKDILLSTFSILNKPEGEKKPLPVDEDLPGMGQYYCLHCDRYFANVAVRDEHFKTKRHKKRLKQMMGPAPHTQLDADLAAGMGLPDNGPKLMSI* | 121 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 18994444 | 18999734 | - | Vvi8g1148 | Vvi8g1148 | 791371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi8g1148 | 120 | Pfam | Zinc-finger double-stranded RNA-binding | 59 | 85 | IPR022755 | - | |
| Vvi8g1148 | 120 | SUPERFAMILY | beta-beta-alpha zinc fingers | 47 | 110 | IPR036236 | - | |
| Vvi8g1148 | 120 | SMART | ZnF_U1_5 | 57 | 91 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi8g1148 | 120 | Gene3D | Classic Zinc Finger | 47 | 110 | - | - | |
| Vvi8g1148 | 120 | PANTHER | EXPRESSED PROTEIN | 1 | 119 | - | - | |
| Vvi8g1148 | 120 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 62 | 84 | IPR013087 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi8g1148 | K14821 | - | vvi:100262388 | 230.335 |