Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1158 ATGGGTAGTAGAACAGTGAAGGTTGGTGCGGAAGATGTTAGCAAAGTCACGCCCGGGATGCCGAGCTTCATTCCTCAGATACCCATATCCAATTCCATTGGCACAGAGGGAAACAATATTCGCTCTCGAATTTCAGATTTTGGGGCGCTGGAGCAGTCCCTTGGATTTCGTATAGAGGATGCTGTTGATCTTAGTAGAAATTCTGTATTCAATTCAGCAAAGCCAAGTAGCCAGGCACCAAGTACCGACCTCCAATTTGGCGCTCTAAATAAGACATCAACAGTACAAAAGGAACTACAACAAAATATAGCTTCTGTTTCTGGTAGTCATCGTGAGAACTGGGGAGAGTCCAATATGGCAGATGCCAGTCCGAGGACTGATACCTCAACAGATGTGGACACGGATGAAAAGAATCAAAGGTTTGAAATGGGTCAATCAGCTGCTCTTGTGGCCTCTGATTCGAGTGACAGATCAAAAGAAAAAGCCGGTGATCAGAAGACATTACGCCGGCTTGCTCAAAATCGTGAAGCTGCCAGAAAAAGCCGATTAAGGAAAAAGGCATATGTGCAACAGCTGGAGAATAGTCGGATGAAGCTGACCCAACTTGAACAAGAGCTCCAGCGAGCCCGCCAGCAGGGCATATTCATTTCAAGCTCAGGAGACCAATCCCATTCAATGAGTGGAAATGGGGCCTTGGCATTTGATGTAGAATATGCTCGGTGGCTAGAAGAGCACAACAGGCAAATAAATGAACTGCGATCGGCTGTCAATTCACATGCAAGTGACACTGAACTTCGCACAATTGTGGACAATGTTACAGCACATTTTGACGACATTTTCAGGTTGAAAGGCATTGCAGCCAAGGCTGATGTCTTCCACATCCTGTCAGGAATGTGGAAGACACCTGCAGAACGGTGTTTTATGTGGATTGGCGGTTTCCGTTCATCTGAAGTCCTCAAGCTTCTTGTAAACCAATTGGAGCCTCTAACGGAGCAACAGTTGATGAGCATCTACAACTTGCAGCAGTCATCCCAACAGGCGGAGGATGCTCTCTCCCAAGGGATGGAGGCCTTGCAACAATCTCTGGCTGAGACGTTAACCAGTGGCTCACCTGGCCCATCTGGATCATCAGGGAATGTGGCAAACTATATGGGCCAGATGGCCATGGCAATGGGTAAGCTAGGGACTCTTGAGGGATTTCTTCGTCAGGCTGATAATCTGCGCCAGCAGACGCTACAGCAGATGCACCGTATATTGACAACCCGGCAGTCTGCACGTGCTCTTCTTGCAATAAATGACTACTTCTCCCGACTTCGAGCCCTCAGCTCTCTGTGGCTTGCGCGGCCACGGGAATGA 1356 48.23 MGSRTVKVGAEDVSKVTPGMPSFIPQIPISNSIGTEGNNIRSRISDFGALEQSLGFRIEDAVDLSRNSVFNSAKPSSQAPSTDLQFGALNKTSTVQKELQQNIASVSGSHRENWGESNMADASPRTDTSTDVDTDEKNQRFEMGQSAALVASDSSDRSKEKAGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNRQINELRSAVNSHASDTELRTIVDNVTAHFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEVLKLLVNQLEPLTEQQLMSIYNLQQSSQQAEDALSQGMEALQQSLAETLTSGSPGPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19088018 19098996 - Vvi8g1158 Vvi8g1158 791381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1158 451 Coils Coil 185 212 - -
Vvi8g1158 451 Coils Coil 242 262 - -
Vvi8g1158 451 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 451 - -
Vvi8g1158 451 Pfam bZIP transcription factor 166 207 IPR004827 GO:0003700|GO:0006355
Vvi8g1158 451 PANTHER TRANSCRIPTION FACTOR TGA9 63 451 - -
Vvi8g1158 451 SMART brlzneu 162 225 IPR004827 GO:0003700|GO:0006355
Vvi8g1158 451 CDD bZIP_HBP1b-like 166 218 - -
Vvi8g1158 451 MobiDBLite consensus disorder prediction 105 127 - -
Vvi8g1158 451 SUPERFAMILY Leucine zipper domain 166 209 IPR046347 GO:0003700|GO:0006355
Vvi8g1158 451 MobiDBLite consensus disorder prediction 105 184 - -
Vvi8g1158 451 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 169 184 IPR004827 GO:0003700|GO:0006355
Vvi8g1158 451 Gene3D - 165 216 - -
Vvi8g1158 451 Pfam Seed dormancy control 248 323 IPR025422 GO:0006351|GO:0043565
Vvi8g1158 451 ProSiteProfiles DOG1 domain profile. 231 448 IPR025422 GO:0006351|GO:0043565
Vvi8g1158 451 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 208 IPR004827 GO:0003700|GO:0006355
Vvi8g1158 451 MobiDBLite consensus disorder prediction 154 178 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15112 PF14144 DOG1 1.70E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1158 K14431 - vvi:100252149 845.114