Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g116 ATGATTTTTTCATGTTTGGTTGGCGTGGGGAAGCGGCCTACCGGGATGGTGGAGGACGTGGTTGAGGCGGTCGCCGTCACATCTCTGTCGCCTGCGGCCCCTTGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGTGTTAGTGGGTGCATATTTGCACCCCACTTTGGATCCGACCAGGGCGCAGCCAGGTTTGCGGCCGTGCACAAGGTGTTCGGCGCCAGCAATGTGTCCAAGCTCTTATTACACATTCCCGTGAACCGGCGCCATGATGCCGTTGTTACCATATCTTATGAGGCTCAGGCGAGGCTGTCGGACCCGGTTTATGGCTGTGTCTCCACCATACTTGCTTTACAACAACAGGTGGCGTCGCTACAAGCGGAGCTCGCAATGGTGCAGGCACAGCTGATAAACAGTAGGTTTGCAGTGGCAAACGCCTTCCAGAACTCTCAGCAGCAGCAGCAGCATCAGATTGCAGTGCTGCAGCCGGCATACTCCAACAATTCAACTGCATCCAATAATCTCATCAATGTCGGCAGCTTCACCTCCAATTTTGACATTGCCTCAGAGACTGCTCCATCTTCCCACAGCTTGGAGCCTCTTCAACTTTCCCAGCCATCCCAAGATGAGGACGAAGACGAGGAAGAGAGTCAGAACCCAGTCATTGTATTATCATGTATCAAGGATAATTCAAAGATCCTTAGCCTAGAAAGGATAACTAGAATGTGTTTGTTATTCCCCATACCCACTTTCTCACTCTCATATTCAACAATGTGCTAA 777 51.22 MIFSCLVGVGKRPTGMVEDVVEAVAVTSLSPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMVQAQLINSRFAVANAFQNSQQQQQHQIAVLQPAYSNNSTASNNLINVGSFTSNFDIASETAPSSHSLEPLQLSQPSQDEDEDEEESQNPVIVLSCIKDNSKILSLERITRMCLLFPIPTFSLSYSTMC* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2636745 2653598 + Vvi8g116 Vvi8g116 790339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g116 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 23 218 - -
Vvi8g116 258 ProSiteProfiles LOB domain profile. 33 135 IPR004883 -
Vvi8g116 258 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 218 - -
Vvi8g116 258 MobiDBLite consensus disorder prediction 190 204 - -
Vvi8g116 258 Coils Coil 114 134 - -
Vvi8g116 258 Pfam Lateral organ boundaries (LOB) domain 34 132 IPR004883 -
Vvi8g116 258 MobiDBLite consensus disorder prediction 190 218 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15113 PF03195 LOB 6.50E-38 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g116 - - vvi:100241627 369.777