Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1179 ATGGGCATGTCAACAGAGTCCCAATTTCATGTGCTAGCTGTTGATGACAGCCTTATCGATAGAAAATTGATTGAGAAGCTCCTCAAGAACTCATCCTATCAAGTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGACCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAGGAAGTGGAGGTGAATCTTATAATTACTGACTACTGTATGCCTGGAATGACAGGCTATGATTTACTCAAAAAAATCAAGGAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGATGCTTAGAAGAAGGAGCAGAAGAATTTTTTCTGAAACCAGTTCAGATATCAGATGTGAATCGGCTTAAACCTCATATGATGAAAGCCAAAACAACAACAACAACAACAGCAACAACAATCCAATAA 474 39.03 MGMSTESQFHVLAVDDSLIDRKLIEKLLKNSSYQVTTVDSGSKALEFLGLHENDPNTPSVSPNSHQEVEVNLIITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQISDVNRLKPHMMKAKTTTTTTATTIQ* 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19337996 19340055 + Vvi8g1179 Vvi8g1179 791402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1179 157 Pfam Response regulator receiver domain 11 134 IPR001789 GO:0000160
Vvi8g1179 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 151 IPR045279 GO:0009736
Vvi8g1179 157 ProSiteProfiles Response regulatory domain profile. 10 143 IPR001789 GO:0000160
Vvi8g1179 157 SMART REC_2 9 142 IPR001789 GO:0000160
Vvi8g1179 157 Gene3D - 10 155 - -
Vvi8g1179 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9 4 151 - -
Vvi8g1179 157 CDD REC_typeA_ARR 11 138 - -
Vvi8g1179 157 SUPERFAMILY CheY-like 8 136 IPR011006 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15116 PF00072 Response_reg 6.20E-21 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1179 K14492 - vvi:100243627 284.648