Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1240 ATGCAATCATCGTCATCATCAGCTATGCCTGGAAACTTCTTAAGCAAAGACCCTGGAGCTTATGATTTAGGAGAATTGGATCAAGCCCTTTTTCTCTATCTCGATGGGCATGATCCTTCAGCTATACAAGAGCAAAGACATAACTCAGATATCAGACCTCCAACGCTAAACATTTTCCCCTCTCAGCCTATGCACGTAGAACCACCAATAAAGGCGAGTCTAGGGTTGGTTTCTCCATCAACCAGCGGTTCAAAGAGACCATCAGAGCCATCTATGGAGTTGGCCAACCCAAAAAATGATGCTAATGTTTCTGGGCCTGATCAACCAGCCAAGGCTGTCAAGCGCGAAGGAAACCGCAAAGGTCCAACATCGAGTTCAGAGCAGGAAGGACCCAAAACGCCAGACCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCCCGGAAAAGCAGGCTAAGAAAAAAGGCTTATGTTCAGCAGCTAGAGTCCAGCAGGATCAAGCTCACACAGCTGGAACAAGAACTACAAAGAGCTAGAGCTCAAGGCCTAATTTTCACTGGTGGAGGACTTTTAGGAGGAGGAGGAGGAGACCAGAATGCTCCTGTGGCTGTGACCAACTTGAGCTCAGATGCCGCCGTCTTTGACATGGAATACGGTAGATGGCTTGAGGAGCACCACCGCCTCATGTGCGAGCTTCGAGCAGCAGTACAAGAGCATTTACCCGAGAACGACCTTCGCCTCTTCGTGGACAACTGCATAGCACACTTCGATGGGATGATGAACCTCAAGAGCATGGTCGCCAAGTCCGATGTCTTTCATCTTGTTTCGGGCATGTGGAAGACTCCGGCCGAACGTTGCTTCATGTGGATGGGTGGTTTCCGCCCATCAGAGGTCATCAAGATCATTCTGAACCAAATTGAGCCCTTAACGGAGCAACAGATCTTGGGGATATGTGGATTACAGCAGTCGACCCAGGAGGCGGAAGAAGCTCTCTCTCAAGGGCTTGAAGCTCTGAATCAGTCTCTCTCAGACACCATAGCTTCAGACTCACTGAGCGCGCCTCCTAACATGGCGAACTACATGGGTCAGATGGCTATTGCCATGAACAAACTCTCTACTCTTGAAGGATTTGTTAGACAGGCGGACAATCTGAGGCACCAGACTATTCACAGGCTGCAGCAAGTCCTGACCACCCGACAAGCGGCAAGGTGTCTGCTGGCCATGGCGGAGTATTTCCACCGCCTCCGAGCTCTCAGTTCTCTCTGGATGGCTCGCCCTCGGCAGGAATGA 1296 50.54 MQSSSSSAMPGNFLSKDPGAYDLGELDQALFLYLDGHDPSAIQEQRHNSDIRPPTLNIFPSQPMHVEPPIKASLGLVSPSTSGSKRPSEPSMELANPKNDANVSGPDQPAKAVKREGNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARAQGLIFTGGGLLGGGGGDQNAPVAVTNLSSDAAVFDMEYGRWLEEHHRLMCELRAAVQEHLPENDLRLFVDNCIAHFDGMMNLKSMVAKSDVFHLVSGMWKTPAERCFMWMGGFRPSEVIKIILNQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTIASDSLSAPPNMANYMGQMAIAMNKLSTLEGFVRQADNLRHQTIHRLQQVLTTRQAARCLLAMAEYFHRLRALSSLWMARPRQE* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19963577 19968092 - Vvi8g1240 Vvi8g1240 791463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1240 431 MobiDBLite consensus disorder prediction 1 20 - -
Vvi8g1240 431 Pfam bZIP transcription factor 137 177 IPR004827 GO:0003700|GO:0006355
Vvi8g1240 431 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 135 179 IPR004827 GO:0003700|GO:0006355
Vvi8g1240 431 Pfam Seed dormancy control 231 305 IPR025422 GO:0006351|GO:0043565
Vvi8g1240 431 SMART brlzneu 133 215 IPR004827 GO:0003700|GO:0006355
Vvi8g1240 431 MobiDBLite consensus disorder prediction 75 103 - -
Vvi8g1240 431 SUPERFAMILY Leucine zipper domain 137 179 IPR046347 GO:0003700|GO:0006355
Vvi8g1240 431 MobiDBLite consensus disorder prediction 41 140 - -
Vvi8g1240 431 Gene3D - 136 185 - -
Vvi8g1240 431 ProSiteProfiles DOG1 domain profile. 213 427 IPR025422 GO:0006351|GO:0043565
Vvi8g1240 431 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 38 430 - -
Vvi8g1240 431 Coils Coil 156 183 - -
Vvi8g1240 431 CDD bZIP_HBP1b-like 137 185 - -
Vvi8g1240 431 PANTHER TRANSCRIPTION FACTOR TGA9 38 430 - -
Vvi8g1240 431 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 140 155 IPR004827 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15118 PF14144 DOG1 4.60E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1240 K14431 - vvi:100262335 851.277