Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1247 ATGACGAAACAACATCTGCGGTTATTCCTCATTGTAATTGTGTTTTCGGTGTTCATCACTTTGCAAGCTTCGGCTATTACAGATCCACGGGATGATTACAGAATAATTCCCTCCTTTTTACTTTCTGCAGTGGCAGCTCTTCAAGACTTGTACAAGGAACTGAACTACCCACCACAGTTGGAGAAGTGGAGATCATATGCTGGGGATCCATGTGATGAATCATGGAAAGGAATCTCATGTTCTGGTTCAACTGTCATTTTCATTCAGCTTCCAGGACTAAATCTCGGTGGACATCTTGGAGGCCAGCTCCATAATCTCCATAATTTGAAGCAACTGGATGTTAGCTCCAATAACATTCAAGGTGAAATTCCTTACGGGTTACCCCCTAATGCCACTCATATAAATTTGGCATGCAACAAATTTAGTCAAAATATCCCCAACTCCCTCACTTTCATGAAGAATCTTCGACATCTGAATCTGAGCCACAATTCATTATCTGGACCCATTGGCAATGTGTTTACTGGCCTACAGAATCTAAAAGAAATGGATCTATCACACAATCACTTTACTGGAGATCTGCCAAGTTCATTTGGAACTTTGAAAAATCTTACTAGATTGTTCTTGCAGAATAACAAGTTTACTGGGTCTGTGATCTTCTTGGCTGATCTCCCACTGTCTCACTTGAACATCCAAAGTAACCATTTTAGTGGCATTATTCCAAGGCAATTTCAGTTGATACCAAATTTATGGTTTGGGGGGAATAGATTCCATCCAGGGGGGAACTATCCACCCTGGGATTTCCCTTTGGAAACTGAGCAGAATATTAATAGCCCACCGACAACTGAATCAAGTGCTGTTGAGAACTACCCCTCTAGAAAAGCACATGAACGCAAGAAGAAAAGGCTGGGTCCTGGAGGAATAGCTCTCATGGTTGGTGGAGGAACTCTGTTGGTAAGCTGTGCAGCACTCCTACTTACTGTCCGCATTAATCGAGCTCGTGCACAAACGCACAAAAGCTTGGAGGGCAGTGAAAGCGCACTGCATTGTATTCCAACCACTACAGTCGAAGAAGAGAGCCCACAAATCTTGGCTCTCAGTCCACCAACGTTTATGTCAAGGCCAATTCCCACTGCTCGCAATGTCAGATTTGAGAAAATTTGCTCCAGAAGAAGTTTCTCTAAGAAATCCAGAATCCCAGCAAATGCAAAGCTTTACACTGTGGCAGAGCTTCAACTAGCTACAAACAGCTTCAGTGAAGAGAACCTTCTTGGAGAAGGATCCCTTGGTTCTGTTTACAAAGGAGAGTTTCCTGATGGCCAAGTCATGGCTGTGAAAAACATAAACACAGTCTCACTCTCTCTCCATGAAGAAGAACAATTCTTGGATGTGATATGGACCGCAGCTCGTTTGAGGCATCCAAACATTGTAACACTTCTTGGGTATTGTGTGGAGCACGGACAGCATCTCCTTGTGTACAAGTTTGTCAGAAATTTGTCTCTTGATGATGCACTGCACTGTGAAGTATACAAGCCTCTGTCTTGGAGCCTCCGACTCCAGATTGCCCTCGGCATTGCACGTGCTTTGAACTATTTGCACTCTGTATGTTCACCTCCTATTGCCCATTGCAACCTAAAGGCCGCCAACATCTTACTTGATGAAGAGCTTACACCTCATATCTGTGACACAGGGCTAGCCGTTTTAAGGCCACTTACAAGCAACACTGTTAAACTGAAGGCTTCTGAGATGGCTATTGGCAATTGTGGCTACATTGCACCTGAACATGGCCAGCCTGGAATCGATAACAAGAAGAGTGATGTATATGCCTTTGGAGTGCTGCTTTTAGAGCTACTAACAGGAAGAAGGCCATTCGATAGTTCAAGATCAAGGGAAGAGCAATCTTTGGTGAAATGGGCTTCTGCCCGGCTTCATGACAATGATTCTTTGGGACAGATGGTTGATTCAGGCATCAAAGGAACTTTCTCCTCCAAGGCTCTCTCACAATATGCAGATATTGTCTCTCTCTGCATTCAGCCCGAGAAAGAATTCAGACCACCAATGACGGAAGTTGTGGAATCTGTTAGACGTCTGTTACAAAAGACGAGAAGCAGGTTAATTGAGGGTGGCGAAGTTGAGGTTGAGGGCTTCGATAAATCTTTCCATTCCACGAACACCCGCTTTGTAGGCTCACCATCAATGAGCATTATGTCCGCCTGA 2214 44.13 MTKQHLRLFLIVIVFSVFITLQASAITDPRDDYRIIPSFLLSAVAALQDLYKELNYPPQLEKWRSYAGDPCDESWKGISCSGSTVIFIQLPGLNLGGHLGGQLHNLHNLKQLDVSSNNIQGEIPYGLPPNATHINLACNKFSQNIPNSLTFMKNLRHLNLSHNSLSGPIGNVFTGLQNLKEMDLSHNHFTGDLPSSFGTLKNLTRLFLQNNKFTGSVIFLADLPLSHLNIQSNHFSGIIPRQFQLIPNLWFGGNRFHPGGNYPPWDFPLETEQNINSPPTTESSAVENYPSRKAHERKKKRLGPGGIALMVGGGTLLVSCAALLLTVRINRARAQTHKSLEGSESALHCIPTTTVEEESPQILALSPPTFMSRPIPTARNVRFEKICSRRSFSKKSRIPANAKLYTVAELQLATNSFSEENLLGEGSLGSVYKGEFPDGQVMAVKNINTVSLSLHEEEQFLDVIWTAARLRHPNIVTLLGYCVEHGQHLLVYKFVRNLSLDDALHCEVYKPLSWSLRLQIALGIARALNYLHSVCSPPIAHCNLKAANILLDEELTPHICDTGLAVLRPLTSNTVKLKASEMAIGNCGYIAPEHGQPGIDNKKSDVYAFGVLLLELLTGRRPFDSSRSREEQSLVKWASARLHDNDSLGQMVDSGIKGTFSSKALSQYADIVSLCIQPEKEFRPPMTEVVESVRRLLQKTRSRLIEGGEVEVEGFDKSFHSTNTRFVGSPSMSIMSA* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20037652 20042794 - Vvi8g1247 Vvi8g1247 791470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1247 737 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 700 - -
Vvi8g1247 737 SUPERFAMILY L domain-like 45 250 - -
Vvi8g1247 737 ProSiteProfiles Protein kinase domain profile. 417 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1247 737 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Vvi8g1247 737 SMART LRR_typ_2 106 130 IPR003591 -
Vvi8g1247 737 SMART LRR_typ_2 176 199 IPR003591 -
Vvi8g1247 737 SMART LRR_typ_2 200 221 IPR003591 -
Vvi8g1247 737 SMART LRR_typ_2 152 175 IPR003591 -
Vvi8g1247 737 Pfam Leucine rich repeat 172 213 IPR001611 GO:0005515
Vvi8g1247 737 Gene3D Ribonuclease Inhibitor 42 269 IPR032675 -
Vvi8g1247 737 Gene3D Phosphorylase Kinase; domain 1 379 494 - -
Vvi8g1247 737 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 24 700 - -
Vvi8g1247 737 Gene3D Transferase(Phosphotransferase) domain 1 495 712 - -
Vvi8g1247 737 Pfam Protein tyrosine and serine/threonine kinase 420 692 IPR001245 GO:0004672|GO:0006468
Vvi8g1247 737 MobiDBLite consensus disorder prediction 272 288 - -
Vvi8g1247 737 MobiDBLite consensus disorder prediction 272 298 - -
Vvi8g1247 737 SUPERFAMILY Protein kinase-like (PK-like) 393 691 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1247 - - - vvi:100252106 1408.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g7 . 387 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.8e-84 310.8
Vvi9g1107 . 395 682 Strubbelig Receptor Gene Family AT1G11130 50.3 6.1e-80 295.8
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi9g7 . 2 703 Strubbelig Receptor Gene Family AT1G53730 63.5 8.9e-199 690.6
Vvi10randomg5 . 17 707 Strubbelig Receptor Gene Family AT1G53730 53.7 2.5e-164 576.2
Vvi9g1107 . 4 686 Strubbelig Receptor Gene Family AT1G53730 51.8 4.1e-143 505.8
Vvi9g7 . 2 695 Strubbelig Receptor Gene Family AT3G14350 56.3 2.3e-172 602.8
Vvi10randomg4 . 45 142 Strubbelig Receptor Gene Family AT3G14350 78.6 2.2e-37 154.5
Vvi10randomg5 . 217 730 Strubbelig Receptor Gene Family AT4G22130 66.3 2.1e-179 625.9
Vvi9g7 . 384 697 Strubbelig Receptor Gene Family AT4G22130 69.3 1.6e-123 440.3
Vvi12g488 . 458 781 Strubbelig Receptor Gene Family AT4G22130 56.3 6.1e-102 368.6
Vvi9g1107 . 393 691 Strubbelig Receptor Gene Family AT4G22130 58.1 2.0e-100 363.6
Vvi8g1247 . 343 699 Strubbelig Receptor Gene Family AT4G22130 52.1 3.1e-98 356.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76787 PF07714 PK_Tyr_Ser-Thr 3.90E-36 CL0016 Vvi PK