Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1247 ATGACGAAACAACATCTGCGGTTATTCCTCATTGTAATTGTGTTTTCGGTGTTCATCACTTTGCAAGCTTCGGCTATTACAGATCCACGGGATGATTACAGAATAATTCCCTCCTTTTTACTTTCTGCAGTGGCAGCTCTTCAAGACTTGTACAAGGAACTGAACTACCCACCACAGTTGGAGAAGTGGAGATCATATGCTGGGGATCCATGTGATGAATCATGGAAAGGAATCTCATGTTCTGGTTCAACTGTCATTTTCATTCAGCTTCCAGGACTAAATCTCGGTGGACATCTTGGAGGCCAGCTCCATAATCTCCATAATTTGAAGCAACTGGATGTTAGCTCCAATAACATTCAAGGTGAAATTCCTTACGGGTTACCCCCTAATGCCACTCATATAAATTTGGCATGCAACAAATTTAGTCAAAATATCCCCAACTCCCTCACTTTCATGAAGAATCTTCGACATCTGAATCTGAGCCACAATTCATTATCTGGACCCATTGGCAATGTGTTTACTGGCCTACAGAATCTAAAAGAAATGGATCTATCACACAATCACTTTACTGGAGATCTGCCAAGTTCATTTGGAACTTTGAAAAATCTTACTAGATTGTTCTTGCAGAATAACAAGTTTACTGGGTCTGTGATCTTCTTGGCTGATCTCCCACTGTCTCACTTGAACATCCAAAGTAACCATTTTAGTGGCATTATTCCAAGGCAATTTCAGTTGATACCAAATTTATGGTTTGGGGGGAATAGATTCCATCCAGGGGGGAACTATCCACCCTGGGATTTCCCTTTGGAAACTGAGCAGAATATTAATAGCCCACCGACAACTGAATCAAGTGCTGTTGAGAACTACCCCTCTAGAAAAGCACATGAACGCAAGAAGAAAAGGCTGGGTCCTGGAGGAATAGCTCTCATGGTTGGTGGAGGAACTCTGTTGGTAAGCTGTGCAGCACTCCTACTTACTGTCCGCATTAATCGAGCTCGTGCACAAACGCACAAAAGCTTGGAGGGCAGTGAAAGCGCACTGCATTGTATTCCAACCACTACAGTCGAAGAAGAGAGCCCACAAATCTTGGCTCTCAGTCCACCAACGTTTATGTCAAGGCCAATTCCCACTGCTCGCAATGTCAGATTTGAGAAAATTTGCTCCAGAAGAAGTTTCTCTAAGAAATCCAGAATCCCAGCAAATGCAAAGCTTTACACTGTGGCAGAGCTTCAACTAGCTACAAACAGCTTCAGTGAAGAGAACCTTCTTGGAGAAGGATCCCTTGGTTCTGTTTACAAAGGAGAGTTTCCTGATGGCCAAGTCATGGCTGTGAAAAACATAAACACAGTCTCACTCTCTCTCCATGAAGAAGAACAATTCTTGGATGTGATATGGACCGCAGCTCGTTTGAGGCATCCAAACATTGTAACACTTCTTGGGTATTGTGTGGAGCACGGACAGCATCTCCTTGTGTACAAGTTTGTCAGAAATTTGTCTCTTGATGATGCACTGCACTGTGAAGTATACAAGCCTCTGTCTTGGAGCCTCCGACTCCAGATTGCCCTCGGCATTGCACGTGCTTTGAACTATTTGCACTCTGTATGTTCACCTCCTATTGCCCATTGCAACCTAAAGGCCGCCAACATCTTACTTGATGAAGAGCTTACACCTCATATCTGTGACACAGGGCTAGCCGTTTTAAGGCCACTTACAAGCAACACTGTTAAACTGAAGGCTTCTGAGATGGCTATTGGCAATTGTGGCTACATTGCACCTGAACATGGCCAGCCTGGAATCGATAACAAGAAGAGTGATGTATATGCCTTTGGAGTGCTGCTTTTAGAGCTACTAACAGGAAGAAGGCCATTCGATAGTTCAAGATCAAGGGAAGAGCAATCTTTGGTGAAATGGGCTTCTGCCCGGCTTCATGACAATGATTCTTTGGGACAGATGGTTGATTCAGGCATCAAAGGAACTTTCTCCTCCAAGGCTCTCTCACAATATGCAGATATTGTCTCTCTCTGCATTCAGCCCGAGAAAGAATTCAGACCACCAATGACGGAAGTTGTGGAATCTGTTAGACGTCTGTTACAAAAGACGAGAAGCAGGTTAATTGAGGGTGGCGAAGTTGAGGTTGAGGGCTTCGATAAATCTTTCCATTCCACGAACACCCGCTTTGTAGGCTCACCATCAATGAGCATTATGTCCGCCTGA 2214 44.13 MTKQHLRLFLIVIVFSVFITLQASAITDPRDDYRIIPSFLLSAVAALQDLYKELNYPPQLEKWRSYAGDPCDESWKGISCSGSTVIFIQLPGLNLGGHLGGQLHNLHNLKQLDVSSNNIQGEIPYGLPPNATHINLACNKFSQNIPNSLTFMKNLRHLNLSHNSLSGPIGNVFTGLQNLKEMDLSHNHFTGDLPSSFGTLKNLTRLFLQNNKFTGSVIFLADLPLSHLNIQSNHFSGIIPRQFQLIPNLWFGGNRFHPGGNYPPWDFPLETEQNINSPPTTESSAVENYPSRKAHERKKKRLGPGGIALMVGGGTLLVSCAALLLTVRINRARAQTHKSLEGSESALHCIPTTTVEEESPQILALSPPTFMSRPIPTARNVRFEKICSRRSFSKKSRIPANAKLYTVAELQLATNSFSEENLLGEGSLGSVYKGEFPDGQVMAVKNINTVSLSLHEEEQFLDVIWTAARLRHPNIVTLLGYCVEHGQHLLVYKFVRNLSLDDALHCEVYKPLSWSLRLQIALGIARALNYLHSVCSPPIAHCNLKAANILLDEELTPHICDTGLAVLRPLTSNTVKLKASEMAIGNCGYIAPEHGQPGIDNKKSDVYAFGVLLLELLTGRRPFDSSRSREEQSLVKWASARLHDNDSLGQMVDSGIKGTFSSKALSQYADIVSLCIQPEKEFRPPMTEVVESVRRLLQKTRSRLIEGGEVEVEGFDKSFHSTNTRFVGSPSMSIMSA* 738
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 20037652 20042794 - Vvi8g1247 Vvi8g1247 791470
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1247 737 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 700 - -
Vvi8g1247 737 SUPERFAMILY L domain-like 45 250 - -
Vvi8g1247 737 ProSiteProfiles Protein kinase domain profile. 417 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1247 737 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Vvi8g1247 737 SMART LRR_typ_2 106 130 IPR003591 -
Vvi8g1247 737 SMART LRR_typ_2 176 199 IPR003591 -
Vvi8g1247 737 SMART LRR_typ_2 200 221 IPR003591 -
Vvi8g1247 737 SMART LRR_typ_2 152 175 IPR003591 -
Vvi8g1247 737 Pfam Leucine rich repeat 172 213 IPR001611 GO:0005515
Vvi8g1247 737 Gene3D Ribonuclease Inhibitor 42 269 IPR032675 -
Vvi8g1247 737 Gene3D Phosphorylase Kinase; domain 1 379 494 - -
Vvi8g1247 737 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 24 700 - -
Vvi8g1247 737 Gene3D Transferase(Phosphotransferase) domain 1 495 712 - -
Vvi8g1247 737 Pfam Protein tyrosine and serine/threonine kinase 420 692 IPR001245 GO:0004672|GO:0006468
Vvi8g1247 737 MobiDBLite consensus disorder prediction 272 288 - -
Vvi8g1247 737 MobiDBLite consensus disorder prediction 272 298 - -
Vvi8g1247 737 SUPERFAMILY Protein kinase-like (PK-like) 393 691 IPR011009 -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76787 PF07714 PK_Tyr_Ser-Thr 3.90E-36 CL0016 Vvi PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1247 - - vvi:100252106 1408.66