Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1257 ATGAAGGAAAATAATAGAAAATTTATAAAATTTATATTAATTATTACATTTGGATTATTTATTAATAGGATCTCATTAAACCCAAACTATTTTGGTTCATATATTTTAATTCATCTCTATTCTTATTTCTATTGGAATTTCTATTTTAGCATTCCAAAGCACGGCTATTTTTTCTTTTTTTTCCACCCAAAAAAGTTCAAGGAGGTCCAAAACGCCATGGTCAGGGCTGTCAAACGTGAAGTGGGTAGTAGTAGCAGAGCGAATGCAAACGAAGCCGGAGCGGATAATTCAGGTCACCAAGGTGTGACTGAACGTAGAGTCCTGCGCTCACGGTACCTCGCCGTGAAGAATCAAATTTGCGATGGGAGAGAGGACATTACCAAAGTTGATTCTGATAAGTTTAAGTCGATCATCAATGAGGTTGAAAGCTTGCATCAGCAAGTACAGAAGCCAAGAGAACAGGTTGCAGATGCAGAGGCTCTTTTGGACATCACAAACACCTTAGTAACCTCTGTGAAGGCTCATGGCAATGAAGGAATTACCCCTTCGGATTTTGTATCCTGTCTTCTTCAGGAGTTTGGGCAAAATCCCGGAGTAAGCACTAGTGCTGAGGATGCTGGGAACTCGATTGTTTGGAAGGACATAGGCCTTGTAGTCTCACATATTTTCAAAAGGGCTTCTGGATGTTGCACTATGCTTGGACCTATGAATACTGAAATGAAGCAACGAAAGCCTGTTGTTCATAATAAGCGTGTGAGACCAACCGAAAGTGCTCGGCCTGAAGAGCTTGATGATACTGTCGTGGAAGAGAAATCTGATACTGATAAGAATATGTCAATTATGTTTGATATCTTGAGGAAGAATAGAAGGGTCAGGCTCGAAAATCTCATTTTGAATAGAAACTCCTTTGCCCAGACAGTGGAAAATTTATTTGCTCTGTCATTTCTTGTAAAAGATGGGCGGGCGGAAATAACTGTGGATGGGAGAGGCTGCCATCTAGTTTCACCAAGGAATGCTCCTGCTGCCAATGCCGTTGTCTCAGGGGAGGTCTGTTACAACCACTTTGTCTTCAGATTTGACTTTAAGGATTGGAAGTTGATGGCAACTTCTGTTGGAGCTGGAGAGGAGCTGATGCCGCAAAGGAATTCGGTAAACCTACCTAACAACTCTCAAACAGACTCAGTAGCTGAAGAATGTGAAGCAGCAGCAGCACCTACAACGCCAATTAGGAAGTTGTCTAGGAATCGTGGTCTGGTTTTACAGGAGCAGGCTGTGGTGGAAGACTCACCAGAAAGTGATGATGCAGGAACAAGAGCTGCTGTCATCCGAAAGGGAAAGGGAAAGCGGAAGCTGAGGTGA 1359 42.53 MKENNRKFIKFILIITFGLFINRISLNPNYFGSYILIHLYSYFYWNFYFSIPKHGYFFFFFHPKKFKEVQNAMVRAVKREVGSSSRANANEAGADNSGHQGVTERRVLRSRYLAVKNQICDGREDITKVDSDKFKSIINEVESLHQQVQKPREQVADAEALLDITNTLVTSVKAHGNEGITPSDFVSCLLQEFGQNPGVSTSAEDAGNSIVWKDIGLVVSHIFKRASGCCTMLGPMNTEMKQRKPVVHNKRVRPTESARPEELDDTVVEEKSDTDKNMSIMFDILRKNRRVRLENLILNRNSFAQTVENLFALSFLVKDGRAEITVDGRGCHLVSPRNAPAANAVVSGEVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEECEAAAAPTTPIRKLSRNRGLVLQEQAVVEDSPESDDAGTRAAVIRKGKGKRKLR* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20172215 20175669 + Vvi8g1257 Vvi8g1257 791480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1257 452 PANTHER UNCHARACTERIZED 71 444 IPR027786 GO:0005634|GO:0006281|GO:0030915
Vvi8g1257 452 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 71 444 - -
Vvi8g1257 452 MobiDBLite consensus disorder prediction 424 452 - -
Vvi8g1257 452 Pfam Nse4 C-terminal 291 377 IPR014854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1257 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - vvi:100255522 725.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g128 Vvi8g1257 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi8g1257 ECH 100 438 Non-SMC Element family AT1G51130 58.6 5.9e-107 384.8
Vvi6g128 ECH 30 393 Non-SMC Element family AT1G51130 51.1 1.8e-95 346.7
Vvi8g1257 ECH 100 429 Non-SMC Element family AT3G20760 55.4 5.4e-94 341.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35