Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1268 ATGGAAATCGACGCAGAGAAGCATCTCCAGAGAAAGCAGTCTCTCTATGAATCCCTGGATGAGAAGTTTCGGATCGAGAAAGAGACGTATAGGGGTCAGCAGTACAGCCAGATTTACTTTGCTCGACTCCACATGATGAGAACTCTCATCTACTCCCTCATTCCTAATTGGAAACCCCATTTGCCTGTTTGTACAGTTTTGGGGCTGGAAGAAGGCAAGGAATGTATCATTGTTGGAACTCTGTACAAGCACATGAAACTTAAACCATGCATTCTTGATGAGTACTCCAAGGAGAGATCTGTGGCCCCGCTTGTCAAGCCTCATAACTTTATGCACTCAGATGATAGTTTGGTGCTGGAGGATGAGAGTGGAAGAGTTAAACTTGGCGGAACAATGCTTTTACCTTCTGTATATGTTACAGGGACTGTTGTTGGTCTGCATGGAAAAGAAACCAGTGCTGGTGAATTTTTGGTACAAGATATTCTGGACGCTGACCTACCACCGCAGATAGAGCTGCCACTAAAATCAAGGGAGGACAAGTATGTTGTTTTTGTATCTGGGCTAAGTGTTGGAAGCAGCACTTCTAATCCTCTCCAATTTCAGCTTCTTGTTGATCATATAACAGGACATCTAGGAGATGAGAAGGAACAAGGTATTGCAGCACAGATAGTTCATGTTGTAATTGCTGGGAATTCTGTTGCAGTTCCACGTGGACTTCTGAATGGACAGAATTTAGCTTCGAAGGATCAGTCAAGGTTGTCCGAACCAATTAAAGAGCTGGATATCTTGTTGACTCAGATTGCTGCAGGTTTGCCTTTGGATATCATGCCAGGGCCTGATGACCCAGCAAACTTCTCATTACCTCAACAGCCCTTGCATAGATGCCTTTTCCCTGGATCATCAGCTTATAACTCATTTAGATCTTGTACTAATCCTCATTCCTTTGAGCTTGAAAATATCAGATTTCTTGGAACATCAGGTCAGAATGTGGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAGCTTGAATTCATGGAAAGGACGTTACGGTGGAGGCATCTAGCACCAACAGCACCTAATACTCTTGGGTGCTATCCATTCACTGATAGAGATCCTTTCTTGATCGAGAGCTGTCCTCATGTTTACTTTGTTGGTAATCAGGATAAATATGAAACTCGCTTAATAAAGGGATCAGAGGGACAGGTTGTAAGACTCATTTGCATTCCTAAATTTTGTGAGACGGGAGTTGCTGTTGTGCTAAACATGAGAAATCTGGAATGCCATGCTCTAAGTTTTGGGACTGAATTCAGCTCATAA 1320 42.8 MEIDAEKHLQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKPHLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVLEDESGRVKLGGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSREDKYVVFVSGLSVGSSTSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGLLNGQNLASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAVVLNMRNLECHALSFGTEFSS* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20234671 20241344 + Vvi8g1268 Vvi8g1268 791491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1268 439 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 433 IPR024826 -
Vvi8g1268 439 CDD MPP_PolD2_C 181 433 IPR041863 -
Vvi8g1268 439 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
Vvi8g1268 439 Pfam DNA polymerase alpha/epsilon subunit B 182 391 IPR007185 GO:0003677|GO:0006260
Vvi8g1268 439 Gene3D - 173 438 - -
Vvi8g1268 439 Gene3D - 40 165 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1268 K02328 - vvi:100241865 882.093