Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1270 ATGTTTTCGTGGTTGGCAAGGCTTGCATTGGCGTGTTGGGGACCTTTGGCCCGTCGATATGCCCCTATGAGCAAGGATGATGATAATTCTGGAAGCGGTGCCAACGACGCGCTCATCTGGTGCCGGGACCTCGAGAAGCACTCATTCGGCGAGTTCTCGTTCGCCGTCGTGCAGGCCAATGAGGTTATCGAAGACCACAGCCAGGTCGAAACGGGCCGCGATGCCACGTTCGTCGGGGTCTACGACGGCCACGGTGGTCCTGAAGCCTCTCGTTTCATCTCCGATCATCTTTTTCTTCATCTAATGAGGCTTGCTCGAGAAAATGGAACAATGTCTGAGGATATCCTCAGAAGTGCTTTTTCTGCGACTGAGGATGGTTTTCTTACTCTTGTGCGTAGGACATGTGGAATAAAACCAGTAATTGCAGCAATTGGGTCTTGTTGTCTGGTTGGAGTTATCTGGAGAGGAACATTATATGTTGCTAACTTGGGTGATTCTCGGGCCGTAATAGGTTGCTTAGGTAGATCAAATAAAATCATTGCTGAGCAGTTGTCCAGGGAACACAATGCAAGTATGGAGGAGGTCAGACAAGAACTCAGGTCCTTGCATCCAGATGATTCACATATTGTAGTTATGAAGCATGGGGTCTGGCGTATCAAAGGCATAATTCAGGTATCGAGATCTATAGGTGATGCATACTTGAAGAGGCCGGAGTTCTCTCTTGATCCATCTTTCCCACGATTCCACCTTCCTGAACCCATTCGTCGGCCTGTGCTAACAGCAGAACCATCCATATGTACAAGAGTATTGCAACCCAATGATAAATTTCTCATATTTGCCTCTGATGGGCTCTGGGAACACTTGACAAATCAGCAAGCAGTTGAGATTGTGCATAATAACCCTCGTGCAGGCATTGCGAGGAGACTTCTTACAACGGCTTTAAACGAGGCAGCTAGGAAGAGAGAGATGAGATACGATGATCTTAAGAAGGTTGGAAAGGGAGTCAGGCGGTTCTTTCATGATGATATTACAGTTGTTGTAATCTATTTAGACCATGAGGTGCTGAGGAAAAATTTTTCTGTACCGGAGCTGTCAGTTCGAGGATTCATCGACACCGTTGGGCCATCGAATTTTAATACCCTGCAAGGGATTGATTCGAAGACAATGTCATGA 1173 47.06 MFSWLARLALACWGPLARRYAPMSKDDDNSGSGANDALIWCRDLEKHSFGEFSFAVVQANEVIEDHSQVETGRDATFVGVYDGHGGPEASRFISDHLFLHLMRLARENGTMSEDILRSAFSATEDGFLTLVRRTCGIKPVIAAIGSCCLVGVIWRGTLYVANLGDSRAVIGCLGRSNKIIAEQLSREHNASMEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLPEPIRRPVLTAEPSICTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVHNNPRAGIARRLLTTALNEAARKREMRYDDLKKVGKGVRRFFHDDITVVVIYLDHEVLRKNFSVPELSVRGFIDTVGPSNFNTLQGIDSKTMS* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20244177 20247931 + Vvi8g1270 Vvi8g1270 791493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1270 390 PANTHER ALPHABET, ISOFORM E-RELATED 4 375 - -
Vvi8g1270 390 SUPERFAMILY PP2C-like 55 351 IPR036457 -
Vvi8g1270 390 CDD PP2Cc 49 350 IPR001932 -
Vvi8g1270 390 SMART PP2C_4 43 348 IPR001932 -
Vvi8g1270 390 Pfam Protein phosphatase 2C 70 318 IPR001932 -
Vvi8g1270 390 ProSiteProfiles PPM-type phosphatase domain profile. 51 350 IPR001932 -
Vvi8g1270 390 PANTHER PROTEIN PHOSPHATASE 2C 43-RELATED 4 375 - -
Vvi8g1270 390 Gene3D - 35 359 IPR036457 -
Vvi8g1270 390 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1270 K01102 - vvi:100258978 789.26