Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1271 ATGGCAGAAACTGAGGATATTCAGCCTCTTGTCTGCGATAATGGAACCGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCGAGGGCTGTGTTTCCTAGCATTGTGGGTAGACCTCGACACACTGGAGTGATGGTTGGGATGGGACAGAAAGATGCCTATGTCGGGGATGAGGCACAATCCAAGAGAGGTATTTTAACTCTAAAATACCCAATTGAGCATGGCATTGTTAGCAATTGGGATGATATGGAAAAAATCTGGCATCACACCTTCTACAATGAGTTGCGTGTGGCTCCAGAGGAGCATCCAGTGCTTCTCACTGAAGCTCCTCTCAACCCAAAGGCCAATCGTGAGAAAATGACTCAAATTATGTTCGAGACCTTCAACACACCCGCCATGTATGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGGTATCGTTCTGGACTCTGGTGATGGTGTGAGCCACACAGTCCCCATTTATGAAGGGTATGCCCTCCCACATGCCATCCTGCGTCTTGACTTGGCAGGACCTGCTGGCATTCATGAAACCACATACAACTCCATCATGAAATGTGATGTGGATATTAGGAAGGATCTGTATGGAAACATTGTCCTCAGTGGTGGCTCCACCATGTTTCCGGGTATTGCTGACAGGATGAGCAAGGAGATTACAGCATTAGCTCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGATGTGGATTTCAAAGGGAGAGTATGATGAGTCAGGGCCATCAATTGTTCACAGGAAATGTTTCTAA 870 48.51 MAETEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGPAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20249817 20252600 - Vvi8g1271 Vvi8g1271 791494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1271 289 Gene3D - 248 287 - -
Vvi8g1271 289 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vvi8g1271 289 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vvi8g1271 289 CDD NBD_sugar-kinase_HSP70_actin 10 216 - -
Vvi8g1271 289 SUPERFAMILY Actin-like ATPase domain 148 289 IPR043129 -
Vvi8g1271 289 ProSitePatterns Actins signature 2. 270 278 IPR004001 -
Vvi8g1271 289 Gene3D - 153 245 - -
Vvi8g1271 289 PANTHER ACTIN 3 1 184 - -
Vvi8g1271 289 PANTHER ACTIN 3 186 288 - -
Vvi8g1271 289 Pfam Actin 186 289 IPR004000 -
Vvi8g1271 289 Pfam Actin 5 184 IPR004000 -
Vvi8g1271 289 Gene3D - 4 152 - -
Vvi8g1271 289 PANTHER ACTIN 186 288 IPR004000 -
Vvi8g1271 289 PANTHER ACTIN 1 184 IPR004000 -
Vvi8g1271 289 SMART actin_3 7 289 IPR004000 -
Vvi8g1271 289 PRINTS Actin signature 28 37 IPR004000 -
Vvi8g1271 289 PRINTS Actin signature 51 62 IPR004000 -
Vvi8g1271 289 PRINTS Actin signature 63 85 IPR004000 -
Vvi8g1271 289 PRINTS Actin signature 117 130 IPR004000 -
Vvi8g1271 289 PRINTS Actin signature 142 161 IPR004000 -
Vvi8g1271 289 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vvi8g1271 289 Gene3D Actin; Chain A, domain 2 36 73 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1271 K10355 - ccav:112504665 468.388