Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g1271 | ATGGCAGAAACTGAGGATATTCAGCCTCTTGTCTGCGATAATGGAACCGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCGAGGGCTGTGTTTCCTAGCATTGTGGGTAGACCTCGACACACTGGAGTGATGGTTGGGATGGGACAGAAAGATGCCTATGTCGGGGATGAGGCACAATCCAAGAGAGGTATTTTAACTCTAAAATACCCAATTGAGCATGGCATTGTTAGCAATTGGGATGATATGGAAAAAATCTGGCATCACACCTTCTACAATGAGTTGCGTGTGGCTCCAGAGGAGCATCCAGTGCTTCTCACTGAAGCTCCTCTCAACCCAAAGGCCAATCGTGAGAAAATGACTCAAATTATGTTCGAGACCTTCAACACACCCGCCATGTATGTCGCTATCCAGGCTGTCCTTTCCCTTTATGCCAGCGGTCGCACAACTGGTATCGTTCTGGACTCTGGTGATGGTGTGAGCCACACAGTCCCCATTTATGAAGGGTATGCCCTCCCACATGCCATCCTGCGTCTTGACTTGGCAGGACCTGCTGGCATTCATGAAACCACATACAACTCCATCATGAAATGTGATGTGGATATTAGGAAGGATCTGTATGGAAACATTGTCCTCAGTGGTGGCTCCACCATGTTTCCGGGTATTGCTGACAGGATGAGCAAGGAGATTACAGCATTAGCTCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGATGTGGATTTCAAAGGGAGAGTATGATGAGTCAGGGCCATCAATTGTTCACAGGAAATGTTTCTAA | 870 | 48.51 | MAETEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGPAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20249817 | 20252600 | - | Vvi8g1271 | Vvi8g1271 | 791494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g1271 | 289 | Gene3D | - | 248 | 287 | - | - | |
Vvi8g1271 | 289 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Vvi8g1271 | 289 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Vvi8g1271 | 289 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 216 | - | - | |
Vvi8g1271 | 289 | SUPERFAMILY | Actin-like ATPase domain | 148 | 289 | IPR043129 | - | |
Vvi8g1271 | 289 | ProSitePatterns | Actins signature 2. | 270 | 278 | IPR004001 | - | |
Vvi8g1271 | 289 | Gene3D | - | 153 | 245 | - | - | |
Vvi8g1271 | 289 | PANTHER | ACTIN 3 | 1 | 184 | - | - | |
Vvi8g1271 | 289 | PANTHER | ACTIN 3 | 186 | 288 | - | - | |
Vvi8g1271 | 289 | Pfam | Actin | 186 | 289 | IPR004000 | - | |
Vvi8g1271 | 289 | Pfam | Actin | 5 | 184 | IPR004000 | - | |
Vvi8g1271 | 289 | Gene3D | - | 4 | 152 | - | - | |
Vvi8g1271 | 289 | PANTHER | ACTIN | 186 | 288 | IPR004000 | - | |
Vvi8g1271 | 289 | PANTHER | ACTIN | 1 | 184 | IPR004000 | - | |
Vvi8g1271 | 289 | SMART | actin_3 | 7 | 289 | IPR004000 | - | |
Vvi8g1271 | 289 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Vvi8g1271 | 289 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Vvi8g1271 | 289 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Vvi8g1271 | 289 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Vvi8g1271 | 289 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Vvi8g1271 | 289 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Vvi8g1271 | 289 | Gene3D | Actin; Chain A, domain 2 | 36 | 73 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g1271 | K10355 | - | ccav:112504665 | 468.388 |