Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1279 ATGGCCTCTTCTCCATCTCATTTCTTCGTACTAATTGCCACCATTTTCATATCTTCACTGTTTCATCCCTCAACTGCTCAACTAAACTCGTCCTTTTACTCCTGCACATGCCCCAATGCATACACCATTGTCCGCAGCATTGTTCACCAGGCCATGGCGTCTGATACCCGGATCGGAGCTAGCCTAGTTCGTTTACATTTCCATGATTGCTTCGCCAACGGATGTGATGCTTCAATTTTGCTGGACGACAGCCCGAGCATACAGAGCGAGAAACATGCTGCTCCCAATTTTAAGTCCGCTCGGGGATTCGAGGTAGTTGACCGCATCAAGGCCGCTCTTGAATGTTCGTGCCGCGGAGTTGTCTCCTGCGCTGACATTCTTGCTCTGGCATCCGAGGCATCAGTCTCTTTGTCAGGGGGTCCTTCATGGACTGTTCTACTGGGCAGAAGGGACAGCACAACGGCCAACCAAGCCGGAGCCAACACTTCAATTCCTTCTCCCTCTGAAGGCTTGGCCAACATTTCCAACAAGTTTTCTGCAGTTGGCCTCGAGATTACCGATCTAGTTGCCTTATCCGGCGCTCACACCTTTGGAAAAGCTCAATGTCGCACATTCAGCGAGAGACTATACAATTTCAAGGGCACCGGCGGTCCAGATCCGACGCTCAACGCAACATACTTGGCTGTTCTTCAACAGATATGTCCAGAGGATGGGAATGGGGGCTTTGGTCTAGCCAACCTTGATCCCACAAATACATCTGACGGTCATGACTTTGATAATAACTACTTTTCCAATCTTCAAAGCCTCCAAGGCCTTCTCCAATCCGATCAAGAGTTATTTTCAACACCCAATGCTAAAATAATCGCAATTGTGAACAGCTTTAGTGGTGATCAGAGCGCCTTCTTTCAGAGCTTTGCTCAGTCCATGGTAAAGATGGGAAACATTAGCCCGTTAACAGGGAAGGATGGGGAGATTAGGTTGAATTGTAGAAAGGTTAATGCAGGCTGA 1008 48.51 MASSPSHFFVLIATIFISSLFHPSTAQLNSSFYSCTCPNAYTIVRSIVHQAMASDTRIGASLVRLHFHDCFANGCDASILLDDSPSIQSEKHAAPNFKSARGFEVVDRIKAALECSCRGVVSCADILALASEASVSLSGGPSWTVLLGRRDSTTANQAGANTSIPSPSEGLANISNKFSAVGLEITDLVALSGAHTFGKAQCRTFSERLYNFKGTGGPDPTLNATYLAVLQQICPEDGNGGFGLANLDPTNTSDGHDFDNNYFSNLQSLQGLLQSDQELFSTPNAKIIAIVNSFSGDQSAFFQSFAQSMVKMGNISPLTGKDGEIRLNCRKVNAG* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20339202 20340580 + Vvi8g1279 Vvi8g1279 791502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1279 335 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 249 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 265 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Vvi8g1279 335 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PRINTS Haem peroxidase superfamily signature 251 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vvi8g1279 335 Gene3D - 32 333 - -
Vvi8g1279 335 SUPERFAMILY Heme-dependent peroxidases 27 333 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PANTHER PEROXIDASE 72-RELATED 10 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 CDD secretory_peroxidase 27 332 IPR033905 GO:0004601|GO:0042744
Vvi8g1279 335 Gene3D Peroxidase, domain 2 165 312 - -
Vvi8g1279 335 ProSiteProfiles Plant heme peroxidase family profile. 27 333 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 Pfam Peroxidase 44 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi8g1279 335 PANTHER PEROXIDASE 22-RELATED 10 334 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g114 Vvi8g1279 ECH
Vvi6g113 Vvi8g1279 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1279 K00430 - vvi:100265920 654.44