Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g128 ATGTTGTGGGTGGACAAGTACAGGCCTAAAACCCTTGACAATCTCATCGTCCACGATGATGTCGCTCAAAATCTGAAGAAACTGGTTACTGAGCAGGATTGCCCCCATTTGCTGTTCTACGGCCCACCCGGATCGGGCAAGAAAACCCTAATCATGGCCATTCTCAGACAGATGTTCGGACCCAGCGCTGACAAGGTGAAGGTAGAGAACAAGACATGGAAAATTGATGCTGGAACGAGAACTATTGATCTGGAGCTTACAACATTATCAAGCACACATCACATGGAACTGAATCCGGGGGATGCAGGCTTTCAGGATAGATACATTGTTCAAGAGATAATTAAAGAAATGGCAAAGAATAGACCAATTGACACAAAAGGAAAGAAGGGGTTTAGAGTATTGGTGCTCAATGAGGTTGACAGACTTTCAAGAGAAGCCCAGCATTCCCTTCGAAGAACAATGGAGAAGTATAGTGCATCATGCCGATTAATTCTATGTTGCAACAGTTCTTCAAAGGTTACGGAAGCAGTTCGGTCTCGCTGTCTAAACATCCGAATAAATGCACCAACAGAAGAGCAGATTACTAAGGTGTTAGAGTTCATTGCTAAGAAAGAAGGGCTGCAACTTCCATCTGGATTTGCTACCCGCATTGCAGAAAAATCAAATCGGAGTTTAAGGAGGGCTATACTATCTTTTGAGACTTGTCGTGTCCAACAGTATCCTTTTACAAATAACCAAGCAATGCCCCCTATGGATTGGGAGGAATATGTTTCTGAAATAGCATCTGACATAATGAAGGAGCAGAGCCCCAAAAGGCTGTTTCAAGTCCGAGGAAAACTGTATGAACTACTCATCAATTGCATTCCTCCAGAAATCATTTTAAAGAGGCTGCTTTTGGAACTATTGAAGAAACTGGATGCCGAACTAAAGCATGAGGTCTGCCATTGGGCTGCATACTATGAGCATAGGATGCGACTTGGACAGAAAGCAATATTTCACATCGAAGCATTTGTGGCCAAGTTCATGAGCATTTATAAGGCTTTCCTCATTGCAACTTTTGGCTGA 1065 43.1 MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGPSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQYPFTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2998941 3022064 - Vvi8g128 Vvi8g128 790351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g128 354 SMART AAA_5 33 192 IPR003593 -
Vvi8g128 354 Gene3D - 1 189 IPR027417 -
Vvi8g128 354 Gene3D - 252 345 - -
Vvi8g128 354 CDD HLD_clamp_RFC 189 238 - -
Vvi8g128 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Vvi8g128 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 237 IPR027417 -
Vvi8g128 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Vvi8g128 354 CDD AAA 16 189 - -
Vvi8g128 354 Pfam DNA polymerase III, delta subunit 19 188 - -
Vvi8g128 354 Gene3D - 190 248 - -
Vvi8g128 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g128 K10756 - vvi:100247946 678.707