Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1280 ATGGGTTTAGGGACTGGAATTATTGGGAAGGGACAGGGCCATGGAGGTGAAGAAGATGAGAGGAAGGTTTCATCAGATCCGCCCGTTCAGCTTGATCTTCTACCGTTTTCCCCTGTTCCTCGCCATCATCCTTCTTCGCAGCTTCGCTTCCCGTGGCTCGCTGATAACCTGATGTCTGAACCCGGTTCATCAGATGGATCCGGGAGAGCCCTGGACGTGAACCGGTTTCCGGTGGCTACATCGAGAGCGAGCGACGATGATGAGAATGGTTCAACTCGGAAGAAACTCAGACTCTCTAAAGAACAATCTGCCTTCCTTGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCTAAGCAAAAGCTGGCTCTAGCCAAACAACTGAATCTCCGGCCACGCCAAGTAGAAGTGTGGTTCCAGAACAGAAGAGCAAGGACAAAGCTGAAGCAGACGGAGGTGGATTGTGAGTATTTAAAGAGATGCTGTGAGACACTGACAGAAGAGAACAGAAGGTTACAGAAGGAGTTGCAAGAATTAAGAGCTTTGAAAACTTCTCAACCCTTCTACATGCAGCTTCCTGCCACCACTCTCACCATGTGCCCTTCCTGCGAGCGCGTGGCCACCACCTCCACCTCTTCCTCCGCCGCCGCCGCCGCCCCCACCTCCACCTCCGCCACCCTTGCCAGAACCAGACTGTTCCCCTTTTCACAAGCCCATGTGCACCAGGCTCCAGCCCACCAGGCTGCTTCATGA 753 52.99 MGLGTGIIGKGQGHGGEEDERKVSSDPPVQLDLLPFSPVPRHHPSSQLRFPWLADNLMSEPGSSDGSGRALDVNRFPVATSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTSTSSSAAAAAPTSTSATLARTRLFPFSQAHVHQAPAHQAAS* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20357118 20358771 + Vvi8g1280 Vvi8g1280 791503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1280 250 PANTHER - 79 233 - -
Vvi8g1280 250 SMART halz 149 192 IPR003106 GO:0006355|GO:0043565
Vvi8g1280 250 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Vvi8g1280 250 CDD homeodomain 93 150 IPR001356 GO:0003677
Vvi8g1280 250 Coils Coil 155 185 - -
Vvi8g1280 250 SMART HOX_1 91 153 IPR001356 GO:0003677
Vvi8g1280 250 MobiDBLite consensus disorder prediction 1 45 - -
Vvi8g1280 250 Pfam Homeodomain 93 147 IPR001356 GO:0003677
Vvi8g1280 250 SUPERFAMILY Homeodomain-like 82 150 IPR009057 -
Vvi8g1280 250 Pfam Homeobox associated leucine zipper 149 183 IPR003106 GO:0006355|GO:0043565
Vvi8g1280 250 Gene3D - 97 147 - -
Vvi8g1280 250 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 79 233 - -
Vvi8g1280 250 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15125 PF00046 Homeodomain 1.50E-15 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1280 K09338 - vvi:100265773 372.474