Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1287 ATGGCTCCTGGAGGCAGCACTTACAAAGAAGTTCTTGAGTCTCACTCCACAGTGACTGACTATGACATAGCAATGACAAAAGCAGACACTAATCTTACACCTGCAAAAACTACTGCTGGCTTGAGTGGAAAAAAGGGAATCTCTTCACCCAATGGTGTCCATGAGCTACTTGAATGTCCTGTATGCACAAGTTTAATGTACCCTCCGATCTACCAGTGTCCAAGTGGCCACACCTTATGTTCAAACTGCAAGAGTAGAGTGCACAACTGTTGCCCAACTTGCCGCCATGAGCTTGGAGATATAAGGTGTTTGGCTTTGGAGAAAGTTGCAGAGTCATTAGAACTTCCCTGCAGATACCAAAGTCTAGGTTGTCATGATATCTTTCCATACTACAGCAAGCTCAAGCACGAGCAACAGTGTCGATTCCATCCATACAACTGCCCATATGCTGGGTTTGAGTGCTCTGTCACTGGGGACATCCCAACCCTTGTTGAGCATCTCAAGGGTGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTGTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAGCTTGGAACAGCACCAGTCTACATGGCCTTTCTGCGATTCATGGGTGATGACAATGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACAGCCGCAAGCTAATATGGCAGGGAGTTCCAAGAAGTATCAGGGACAGTCATAGGAAAGTTCGCGACAGTCAGGATGGACTCATCATTCAAAGGAACTTGGCTCTCTACTTCTCTGGAGGTGATCGGCAAGAGCTGAAGCTGAGGGTCACCGGCCGAATTTGGAAAGAAAGTGAATTATGGAAAGACAATGGATGTTAG 948 46.1 MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPAKTTAGLSGKKGISSPNGVHELLECPVCTSLMYPPIYQCPSGHTLCSNCKSRVHNCCPTCRHELGDIRCLALEKVAESLELPCRYQSLGCHDIFPYYSKLKHEQQCRFHPYNCPYAGFECSVTGDIPTLVEHLKGDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGKQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFSYSLEVGGNSRKLIWQGVPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVTGRIWKESELWKDNGC* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20406503 20408855 + Vvi8g1287 Vvi8g1287 791510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1287 315 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Vvi8g1287 315 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Vvi8g1287 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Vvi8g1287 315 SUPERFAMILY RING/U-box 49 101 - -
Vvi8g1287 315 CDD Sina 173 301 - -
Vvi8g1287 315 SUPERFAMILY TRAF domain-like 112 304 - -
Vvi8g1287 315 CDD RING-HC_SIAHs 57 95 - -
Vvi8g1287 315 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi8g1287 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 306 - -
Vvi8g1287 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 111 IPR013083 -
Vvi8g1287 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 166 IPR013083 -
Vvi8g1287 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g108 Vvi8g1287 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1287 K04506 - vvi:100233085 676.396