Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1324 ATGTCATCACGTTTTTGGACTGCTCAGGGTGACAGTGACACTGAGGAGGAGGAGAGTGATTATGAGGATGGAGTTGAAAGGGGAGGAGCAGCAGGTGAGTCTGCACCACATGCTGGCAGCAGATACCTACAGGCTAATGCTAGTGATAGTGATGATTCTGATGGTCAAAAGCGTGTTGTGCGATCTGCTAAAGACAAGCGGTTTGAGGAGATGTCTGCTACTGTTGATCAGATGAAGAATGCTATGAAGATCAATGACTGGGTCAGCCTACAAGAGAGCTTTGACAAAATAAATAAGCAGCTTGAGAAAGTCATGCGGGTTACAGAATCTGATAAAGTTCCTACCCTTTACATTAAGGCGCTTGTGATGTTGGAGGACTTTTTGAGTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGTAATGCCAAGGCCCTGAACTCAATGAAACAGAAATTGAAGAAGAACAATAAGCAGTATGAAGATCTGATTAATAAGTATAGGGAACATCCTGAGAGCGAAGAAGAAGAAGACGAGGAGGATGGAGAGGATAGAGAAGATAGTGCTGCTGAAGCTGGTGGGGGTTGGGAGAAAAAGATGAGCAAGAAAGATAAGCTAATGGACAAGCAGTTCATGAAGGACCCAAGTGAGATTACATGGGATACGGTTAACAAGAAATTCAAGGAGATTGTGGCTGTTCGTGGTAGGAAAGGAACTGGAAGGATTGAGCAGGTCGAACAGCTTACTTTCTTGACAAGGGTTGCCAAGACCCCTGCCCAGAAGCTGGAGATCCTTTTCAGTGTCGTTTCTGCTCAGTTTGATGTTAATCCAAGTCTTAGTGGGCACATGCCAATAAATGTGTGGAAGAAGTGTGTGCAGAATATGCTTGTTATACTTGACATTCTAGTTCAGCATTCAAACATTTTGGTGGATGATGTTGTTGAGCCTGAAGAGAATGAAACCCAAAAAGGAGCAGACTATAAGGGGACAATTCGAGTTTGGGGAAATTTGGTTGCCTTCCTTGAGAGGATAGATGTGGAGTTCTTTAAGAGCTTGCAGTGCATTGATCCACACACTCGCGAGTATGTTGAAAGACTGAGGGATGAGCCTTTGTTTCTTGTGCTTGCCCAAAATGTCCAGGATTATTTAGAGCGAGTCGGGGATTTCAAGGCTGCTTCAAAGGTAGCTCTGAGGCGGGTTGAGCTCATCTATTATAAACCACAGGAGGAGCCCAGAAATAGTAGGACTCTGATGGATATTCTAGTTTCCCTCATATACAATCATGGGGATGAACGGACTAAGGCTCGGGCTATGCTCTGTGACATTTACCACCATGCTATCCTGGATGAGTTTTCAACTGCCCGTGATCTGTTGCTGATGAGTCACTTGCAGGACAATGTTCAGCATATGGACATTTCAACGCAGATCCTTTTTAACAGGGCCATGGCACAGCTTGGACTGTGTGCATTTAGGGTTGGACTGATTGCTGAAGGACATGGTTGCCTGTCTGAACTATATTCAGGAGGGAGAGTAAAGGAATTGCTCGCACAAGGTGTTTCACAAAGTCGGTACCACGAGAAGACTCCAGAGCAGGAGAGGATTGAAAGGAGACGACAGATGCCTTACCACATGCACATAAATCTTGAGCTCCTGGAGGGAGTCCATCTAATATGTGCCATGCTCCTGGAGGTCCCAAACATGGCTGCCAATACGCACGATGCCAAGCGCAAGGTTATAAGTAAAACATTTCGGCGGTTGCTTGAGGTGAGTGAAAGGCAGACATTCACTGGCCCACCTGAAAATGTTAGAGACCATGTAATGGCTGCCACCAGGGCCCTTAGCAAGGGGGACTTCCAGAAAGCCTTTGATGTTATCAAGTCCCTTGATTTTTGGAAGCTCCTCAGGAACCGTGAGGATGTCCTTGAGATGCTGAGGGCGAAGATAAAGGAAGAGGCTCTGAGGACCTACCTTTTTACCTACTCATTATCCTATAATACTCTGAGCTTGGACCAGCTTACCAAAATGTTTGACCTTTCAGAAACTCTGACCCACAGTATCATCAGTAAGATGATGGTCATGGAAGAGTTGCATGCAAGCTGGGACCAGCCCACCCGTTGCATTGTTTTCCATGATGTGGAGCACACAAGGCTGCAGGCCTTGTCATTCCAGCTGACAGACAAGCTGACAATTCTTGCAGAAAACAACGAGCGGGCATATGAGGCTAAAATAGGTGGTGGTGGGTTGGATCTGCCACTAAGGCGGAGGGATGGCCAGGATTATGCTGGTGCAGCTTCTGTTGGTGGTAAATGGCAGGACAACTTTTCTTTCAGTCAGGGAAGGCAAGGTGGTCAGTCACGAGGAACAGGAGGCTATTCAGGGGGCTACCAGAGCACTCGGTATCAAGATGCTGCATATGGGAGGACTGCTTATCAGACTAGTTCAGCTGTAAGGGGATCCCAGATGGATACTTCAACCCGCATGGTCAGTCTGAACAGGGGTGTTCGTGCTTAG 2520 46.59 MSSRFWTAQGDSDTEEEESDYEDGVERGGAAGESAPHAGSRYLQANASDSDDSDGQKRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESDKVPTLYIKALVMLEDFLSQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYREHPESEEEEDEEDGEDREDSAAEAGGGWEKKMSKKDKLMDKQFMKDPSEITWDTVNKKFKEIVAVRGRKGTGRIEQVEQLTFLTRVAKTPAQKLEILFSVVSAQFDVNPSLSGHMPINVWKKCVQNMLVILDILVQHSNILVDDVVEPEENETQKGADYKGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQDYLERVGDFKAASKVALRRVELIYYKPQEEPRNSRTLMDILVSLIYNHGDERTKARAMLCDIYHHAILDEFSTARDLLLMSHLQDNVQHMDISTQILFNRAMAQLGLCAFRVGLIAEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERIERRRQMPYHMHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEALRTYLFTYSLSYNTLSLDQLTKMFDLSETLTHSIISKMMVMEELHASWDQPTRCIVFHDVEHTRLQALSFQLTDKLTILAENNERAYEAKIGGGGLDLPLRRRDGQDYAGAASVGGKWQDNFSFSQGRQGGQSRGTGGYSGGYQSTRYQDAAYGRTAYQTSSAVRGSQMDTSTRMVSLNRGVRA* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20821412 20826148 - Vvi8g1324 Vvi8g1324 791547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1324 839 MobiDBLite consensus disorder prediction 135 155 - -
Vvi8g1324 839 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 413 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1324 839 SUPERFAMILY Winged helix DNA-binding domain 644 716 IPR036390 -
Vvi8g1324 839 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 416 839 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1324 839 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 412 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1324 839 MobiDBLite consensus disorder prediction 819 839 - -
Vvi8g1324 839 Pfam PCI domain 585 713 IPR000717 -
Vvi8g1324 839 Coils Coil 146 173 - -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 136 155 - -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 176 190 - -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 1 65 - -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 775 796 - -
Vvi8g1324 839 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 790 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi8g1324 839 SMART PINT_4 646 734 IPR000717 -
Vvi8g1324 839 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 416 839 - -
Vvi8g1324 839 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 412 - -
Vvi8g1324 839 ProSiteProfiles PCI domain profile. 545 717 IPR000717 -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 819 833 - -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 51 65 - -
Vvi8g1324 839 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 646 734 - -
Vvi8g1324 839 MobiDBLite consensus disorder prediction 170 204 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1324 K03252 - vvi:100252123 1493.02