Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g1324 | ATGTCATCACGTTTTTGGACTGCTCAGGGTGACAGTGACACTGAGGAGGAGGAGAGTGATTATGAGGATGGAGTTGAAAGGGGAGGAGCAGCAGGTGAGTCTGCACCACATGCTGGCAGCAGATACCTACAGGCTAATGCTAGTGATAGTGATGATTCTGATGGTCAAAAGCGTGTTGTGCGATCTGCTAAAGACAAGCGGTTTGAGGAGATGTCTGCTACTGTTGATCAGATGAAGAATGCTATGAAGATCAATGACTGGGTCAGCCTACAAGAGAGCTTTGACAAAATAAATAAGCAGCTTGAGAAAGTCATGCGGGTTACAGAATCTGATAAAGTTCCTACCCTTTACATTAAGGCGCTTGTGATGTTGGAGGACTTTTTGAGTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGTAATGCCAAGGCCCTGAACTCAATGAAACAGAAATTGAAGAAGAACAATAAGCAGTATGAAGATCTGATTAATAAGTATAGGGAACATCCTGAGAGCGAAGAAGAAGAAGACGAGGAGGATGGAGAGGATAGAGAAGATAGTGCTGCTGAAGCTGGTGGGGGTTGGGAGAAAAAGATGAGCAAGAAAGATAAGCTAATGGACAAGCAGTTCATGAAGGACCCAAGTGAGATTACATGGGATACGGTTAACAAGAAATTCAAGGAGATTGTGGCTGTTCGTGGTAGGAAAGGAACTGGAAGGATTGAGCAGGTCGAACAGCTTACTTTCTTGACAAGGGTTGCCAAGACCCCTGCCCAGAAGCTGGAGATCCTTTTCAGTGTCGTTTCTGCTCAGTTTGATGTTAATCCAAGTCTTAGTGGGCACATGCCAATAAATGTGTGGAAGAAGTGTGTGCAGAATATGCTTGTTATACTTGACATTCTAGTTCAGCATTCAAACATTTTGGTGGATGATGTTGTTGAGCCTGAAGAGAATGAAACCCAAAAAGGAGCAGACTATAAGGGGACAATTCGAGTTTGGGGAAATTTGGTTGCCTTCCTTGAGAGGATAGATGTGGAGTTCTTTAAGAGCTTGCAGTGCATTGATCCACACACTCGCGAGTATGTTGAAAGACTGAGGGATGAGCCTTTGTTTCTTGTGCTTGCCCAAAATGTCCAGGATTATTTAGAGCGAGTCGGGGATTTCAAGGCTGCTTCAAAGGTAGCTCTGAGGCGGGTTGAGCTCATCTATTATAAACCACAGGAGGAGCCCAGAAATAGTAGGACTCTGATGGATATTCTAGTTTCCCTCATATACAATCATGGGGATGAACGGACTAAGGCTCGGGCTATGCTCTGTGACATTTACCACCATGCTATCCTGGATGAGTTTTCAACTGCCCGTGATCTGTTGCTGATGAGTCACTTGCAGGACAATGTTCAGCATATGGACATTTCAACGCAGATCCTTTTTAACAGGGCCATGGCACAGCTTGGACTGTGTGCATTTAGGGTTGGACTGATTGCTGAAGGACATGGTTGCCTGTCTGAACTATATTCAGGAGGGAGAGTAAAGGAATTGCTCGCACAAGGTGTTTCACAAAGTCGGTACCACGAGAAGACTCCAGAGCAGGAGAGGATTGAAAGGAGACGACAGATGCCTTACCACATGCACATAAATCTTGAGCTCCTGGAGGGAGTCCATCTAATATGTGCCATGCTCCTGGAGGTCCCAAACATGGCTGCCAATACGCACGATGCCAAGCGCAAGGTTATAAGTAAAACATTTCGGCGGTTGCTTGAGGTGAGTGAAAGGCAGACATTCACTGGCCCACCTGAAAATGTTAGAGACCATGTAATGGCTGCCACCAGGGCCCTTAGCAAGGGGGACTTCCAGAAAGCCTTTGATGTTATCAAGTCCCTTGATTTTTGGAAGCTCCTCAGGAACCGTGAGGATGTCCTTGAGATGCTGAGGGCGAAGATAAAGGAAGAGGCTCTGAGGACCTACCTTTTTACCTACTCATTATCCTATAATACTCTGAGCTTGGACCAGCTTACCAAAATGTTTGACCTTTCAGAAACTCTGACCCACAGTATCATCAGTAAGATGATGGTCATGGAAGAGTTGCATGCAAGCTGGGACCAGCCCACCCGTTGCATTGTTTTCCATGATGTGGAGCACACAAGGCTGCAGGCCTTGTCATTCCAGCTGACAGACAAGCTGACAATTCTTGCAGAAAACAACGAGCGGGCATATGAGGCTAAAATAGGTGGTGGTGGGTTGGATCTGCCACTAAGGCGGAGGGATGGCCAGGATTATGCTGGTGCAGCTTCTGTTGGTGGTAAATGGCAGGACAACTTTTCTTTCAGTCAGGGAAGGCAAGGTGGTCAGTCACGAGGAACAGGAGGCTATTCAGGGGGCTACCAGAGCACTCGGTATCAAGATGCTGCATATGGGAGGACTGCTTATCAGACTAGTTCAGCTGTAAGGGGATCCCAGATGGATACTTCAACCCGCATGGTCAGTCTGAACAGGGGTGTTCGTGCTTAG | 2520 | 46.59 | MSSRFWTAQGDSDTEEEESDYEDGVERGGAAGESAPHAGSRYLQANASDSDDSDGQKRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESDKVPTLYIKALVMLEDFLSQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYREHPESEEEEDEEDGEDREDSAAEAGGGWEKKMSKKDKLMDKQFMKDPSEITWDTVNKKFKEIVAVRGRKGTGRIEQVEQLTFLTRVAKTPAQKLEILFSVVSAQFDVNPSLSGHMPINVWKKCVQNMLVILDILVQHSNILVDDVVEPEENETQKGADYKGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQDYLERVGDFKAASKVALRRVELIYYKPQEEPRNSRTLMDILVSLIYNHGDERTKARAMLCDIYHHAILDEFSTARDLLLMSHLQDNVQHMDISTQILFNRAMAQLGLCAFRVGLIAEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERIERRRQMPYHMHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEALRTYLFTYSLSYNTLSLDQLTKMFDLSETLTHSIISKMMVMEELHASWDQPTRCIVFHDVEHTRLQALSFQLTDKLTILAENNERAYEAKIGGGGLDLPLRRRDGQDYAGAASVGGKWQDNFSFSQGRQGGQSRGTGGYSGGYQSTRYQDAAYGRTAYQTSSAVRGSQMDTSTRMVSLNRGVRA* | 840 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20821412 | 20826148 | - | Vvi8g1324 | Vvi8g1324 | 791547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 135 | 155 | - | - | |
Vvi8g1324 | 839 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 47 | 413 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Vvi8g1324 | 839 | SUPERFAMILY | Winged helix DNA-binding domain | 644 | 716 | IPR036390 | - | |
Vvi8g1324 | 839 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 416 | 839 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Vvi8g1324 | 839 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 412 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 819 | 839 | - | - | |
Vvi8g1324 | 839 | Pfam | PCI domain | 585 | 713 | IPR000717 | - | |
Vvi8g1324 | 839 | Coils | Coil | 146 | 173 | - | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 136 | 155 | - | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 176 | 190 | - | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 775 | 796 | - | - | |
Vvi8g1324 | 839 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 790 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Vvi8g1324 | 839 | SMART | PINT_4 | 646 | 734 | IPR000717 | - | |
Vvi8g1324 | 839 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 416 | 839 | - | - | |
Vvi8g1324 | 839 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 1 | 412 | - | - | |
Vvi8g1324 | 839 | ProSiteProfiles | PCI domain profile. | 545 | 717 | IPR000717 | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 819 | 833 | - | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 51 | 65 | - | - | |
Vvi8g1324 | 839 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 646 | 734 | - | - | |
Vvi8g1324 | 839 | MobiDBLite | consensus disorder prediction | 170 | 204 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g1324 | K03252 | - | vvi:100252123 | 1493.02 |