Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1362 ATGTATCATCATCACCATCATCAAGGAAAGAACATCCATCCTTCTTCAAGAACGCCCATCACTCCTGAAAGGAATTTGTTCCTGCAAGGTGGGAATGGCCCTGGTGATTCAGGACTTGTCCTCTCAACCGATGCTAAGCCTAGACTTAAATGGACGCCAGACCTTCATGAGCGGTTCATAGAAGCAGTTAATCAGCTTGGAGGGGCAGACAAGGCTACTCCAAAAACTGTTATGAAACTTATGGGAATTCCTGGACTTACCTTATACCATCTGAAGAGTCATCTACAGAAATACAGGCTCAGTAAGAATCTTCATGGACAAGCTAACAGTGCGACCAGCAAAACTGTGGTGGGAGAGAGGATGCCTGAAGCAAATGGAGCCCTAATGAGCAGCCCCAACATTGGGAACCAAACAAACAAGAGCTTACATTTAAGTGAAACACTACAGATGATTGAAGCACAGAGAAGGTTACATGAGCAGCTTGAGGTGCAGCGACACCTACAGCTCCGGATCGAAGCACAAGGAAAATACCTACAGGCAGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTGGGAGCAGTGGGACTTGAAGCAGCCAAAGTTCAGCTGTCTGAGTTGGTATCTAAAGTATCAACCCAATGCCTCCATTCTGCATTTTCAGAGCTCAAAGAACTGCAGAAGCAGGAGATACACAACTGTGGGATGGGGTTGAGACCATATACTAATGGGAATGGCAGCAACAGCTATTCTGAGGGCAGATTTAAAGGGAGAGCTGAGGCAGACAATTTTATGTCGCATGGATACAGGCTCCCTTGTTTTGGGGCAAAATTGGACCTAAATGCCCATGACGAAAATGATGTCACTTTGAGTTGCAAACAATTTGATTTGAATGGTTTCAGCTGGAACTGA 918 45.75 MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSKTVVGERMPEANGALMSSPNIGNQTNKSLHLSETLQMIEAQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHSAFSELKELQKQEIHNCGMGLRPYTNGNGSNSYSEGRFKGRAEADNFMSHGYRLPCFGAKLDLNAHDENDVTLSCKQFDLNGFSWN* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21070353 21073576 - Vvi8g1362 Vvi8g1362 791585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1362 305 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Vvi8g1362 305 Gene3D - 45 104 - -
Vvi8g1362 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Vvi8g1362 305 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Vvi8g1362 305 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Vvi8g1362 305 Coils Coil 144 164 - -
Vvi8g1362 305 PANTHER MYB-RELATED PROTEIN 2 4 233 - -
Vvi8g1362 305 PANTHER MYB-RELATED PROTEIN 2 261 305 - -
Vvi8g1362 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 261 305 IPR044848 GO:0003700
Vvi8g1362 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 233 IPR044848 GO:0003700
Vvi8g1362 305 MobiDBLite consensus disorder prediction 1 38 - -
Vvi8g1362 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g15 Vvi8g1362 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15132 PF00249 Myb_DNA-binding 4.50E-09 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1362 - - vvi:100248614 480.33