Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1362 ATGTATCATCATCACCATCATCAAGGAAAGAACATCCATCCTTCTTCAAGAACGCCCATCACTCCTGAAAGGAATTTGTTCCTGCAAGGTGGGAATGGCCCTGGTGATTCAGGACTTGTCCTCTCAACCGATGCTAAGCCTAGACTTAAATGGACGCCAGACCTTCATGAGCGGTTCATAGAAGCAGTTAATCAGCTTGGAGGGGCAGACAAGGCTACTCCAAAAACTGTTATGAAACTTATGGGAATTCCTGGACTTACCTTATACCATCTGAAGAGTCATCTACAGAAATACAGGCTCAGTAAGAATCTTCATGGACAAGCTAACAGTGCGACCAGCAAAACTGTGGTGGGAGAGAGGATGCCTGAAGCAAATGGAGCCCTAATGAGCAGCCCCAACATTGGGAACCAAACAAACAAGAGCTTACATTTAAGTGAAACACTACAGATGATTGAAGCACAGAGAAGGTTACATGAGCAGCTTGAGGTGCAGCGACACCTACAGCTCCGGATCGAAGCACAAGGAAAATACCTACAGGCAGTGCTGGAGAAAGCCCAGGAGACACTAGGAAGACAGAACTTGGGAGCAGTGGGACTTGAAGCAGCCAAAGTTCAGCTGTCTGAGTTGGTATCTAAAGTATCAACCCAATGCCTCCATTCTGCATTTTCAGAGCTCAAAGAACTGCAGAAGCAGGAGATACACAACTGTGGGATGGGGTTGAGACCATATACTAATGGGAATGGCAGCAACAGCTATTCTGAGGGCAGATTTAAAGGGAGAGCTGAGGCAGACAATTTTATGTCGCATGGATACAGGCTCCCTTGTTTTGGGGCAAAATTGGACCTAAATGCCCATGACGAAAATGATGTCACTTTGAGTTGCAAACAATTTGATTTGAATGGTTTCAGCTGGAACTGA 918 45.75 MYHHHHHQGKNIHPSSRTPITPERNLFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSATSKTVVGERMPEANGALMSSPNIGNQTNKSLHLSETLQMIEAQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEAAKVQLSELVSKVSTQCLHSAFSELKELQKQEIHNCGMGLRPYTNGNGSNSYSEGRFKGRAEADNFMSHGYRLPCFGAKLDLNAHDENDVTLSCKQFDLNGFSWN* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21070353 21073576 - Vvi8g1362 Vvi8g1362 791585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1362 305 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Vvi8g1362 305 Gene3D - 45 104 - -
Vvi8g1362 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Vvi8g1362 305 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Vvi8g1362 305 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Vvi8g1362 305 Coils Coil 144 164 - -
Vvi8g1362 305 PANTHER MYB-RELATED PROTEIN 2 4 233 - -
Vvi8g1362 305 PANTHER MYB-RELATED PROTEIN 2 261 305 - -
Vvi8g1362 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 261 305 IPR044848 GO:0003700
Vvi8g1362 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 233 IPR044848 GO:0003700
Vvi8g1362 305 MobiDBLite consensus disorder prediction 1 38 - -
Vvi8g1362 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1362 - - - vvi:100248614 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g15 Vvi8g1362 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1362 . . . . . Bpe03g01302 . . Cmo06g01724 Cmo14g01154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g01787 Blo07g01419 . . Bda05g01256 . . . . . . . . . . . . . Bhi11g01506 . . . . . . Cla10g01268 Cam10g1350 Cec10g1341 Cco10g1314 Clacu10g1325 Cmu10g2094 Cre10g1479 . Csa03g04029 Chy04g01368 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi2g717 . 193 336 G2-like Transcription Factor Family AT1G32240 66.9 1.6e-38 156.0
Vvi18g841 . 1 160 G2-like Transcription Factor Family AT5G42630 57.5 6.7e-44 174.5
Vvi6g486 . 112 394 G2-like Transcription Factor Family AT5G59570 51.3 1.3e-63 240.4
Vvi11g406 . 1 294 G2-like Transcription Factor Family AT2G03500 58.5 4.5e-89 325.5
Vvi1g270 . 1 238 G2-like Transcription Factor Family AT1G25550 61.4 4.1e-67 251.9
Vvi1g270 . 2 238 G2-like Transcription Factor Family AT3G25790 51.8 3.6e-49 192.2
Vvi9g1111 . 1 449 G2-like Transcription Factor Family AT3G13040 51.0 1.1e-93 340.9
Vvi6g486 . 112 361 G2-like Transcription Factor Family AT3G46640 55.4 8.2e-67 251.1
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT5G05090 51.9 3.5e-39 159.1
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT4G13640 69.8 6.1e-61 231.5
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi1g923 . 1 287 G2-like Transcription Factor Family AT1G69580 54.2 6.5e-59 224.9
Vvi19g1171 . 1 327 G2-like Transcription Factor Family AT1G79430 59.0 1.5e-90 330.1
Vvi3g1096 . 5 212 G2-like Transcription Factor Family AT1G79430 61.9 3.8e-57 219.2
Vvi5g894 . 16 191 G2-like Transcription Factor Family AT1G79430 60.4 5.0e-41 165.6
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT3G10760 53.4 2.3e-40 163.3
Vvi6g486 . 133 310 G2-like Transcription Factor Family AT2G40970 51.9 1.9e-39 159.8
Vvi7g615 . 8 323 G2-like Transcription Factor Family AT4G28610 51.1 4.9e-69 258.8
Vvi14g670 . 67 313 G2-like Transcription Factor Family AT4G28610 52.6 2.0e-54 210.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003788 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15132 PF00249 Myb_DNA-binding 4.50E-09 CL0123 Vvi TF