Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1384 ATGAGTTGTCAGAGTCAGTTGCCGCCGCAGTATCCGAGGCAAAGCTCAAGTACGAGTTCGTCTGCCATGGATGGCTCATATGGGGTTGTGAATTCCAACAACATGGAAGCCAAACAGGGTTCGAGTCTTGTCAGGCAAAGTAGCTCTCCTGCTGGGCTTTTCTCTCACCTTTCGGGTCAGAATGGCTATGCCATTATGAGAGGTGTGGGAAACTTTAGACCTGGGAATGTTGGTAATGGAGAAATCAGCCCATCAACTAGCAGGTTGAAGCCTCAAGTTAGCTTCTCTTCTGGATTACCTTCTTCCTTGGGACTATTGCCTCAGATCTCTGAAATTGGAAGTGACCCTGGATTCCCATATGGCTCTTGGAATGATTCTGCCCATTTTGAGAACTTCAGTGGCATGAAAAGGGACCAAGACAATGATGGGAAGTTGTATTCTGGTTCAAATACATCTGGTATTCGGAATGAGGAGTTTGGACATCGCTCTCAAATCTTGTCCCACCACCTAAGTTTGCCAAAGACTTCAGCTGAGATGGCTGCCATGGAGAAGTTCCTTCAGTTCCAAGACTCTGTTCCTTGTAAGATTCGTGCAAAGCGGGGTTGTGCTACTCATCCAAGAAGCATCGCTGAAAGGGTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATACACTTACTGATAATCGTGCACACTGCAAGTGTTTAGGTAAGCAGAAACCGGTCCCAAATCAAACTGTTTGA 843 46.14 MSCQSQLPPQYPRQSSSTSSSAMDGSYGVVNSNNMEAKQGSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSSGLPSSLGLLPQISEIGSDPGFPYGSWNDSAHFENFSGMKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21244263 21247057 - Vvi8g1384 Vvi8g1384 791607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1384 280 Gene3D - 203 273 IPR036638 GO:0046983
Vvi8g1384 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 266 IPR036638 GO:0046983
Vvi8g1384 280 SMART finulus 208 258 IPR011598 GO:0046983
Vvi8g1384 280 Pfam Helix-loop-helix DNA-binding domain 207 253 IPR011598 GO:0046983
Vvi8g1384 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 271 - -
Vvi8g1384 280 MobiDBLite consensus disorder prediction 134 154 - -
Vvi8g1384 280 MobiDBLite consensus disorder prediction 1 33 - -
Vvi8g1384 280 PANTHER TRANSCRIPTION FACTOR BHLH130 4 271 - -
Vvi8g1384 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Vvi8g1384 280 CDD bHLH_AtbHLH_like 207 259 IPR045239 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g164 Vvi8g1384 ECH
Vvi8g1384 Vvi13g1179 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15135 PF00010 HLH 1.90E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1384 - - vvi:100267478 519.62