Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1385 ATGTCCCTGCTTCTTTTTTTCTATATAACGTTACACTTTCCTTTTGAATTACTAAAAAGTCCCTACCACCCCACTTTGCAGATGAGAAAAGCTGCTCTTTGCGTTTTTTTTTTCCTTTTTAAATACTTTTTATACATTGAAAATGTACGGAATTTAAATTCAACTCCAACTACATTACTCAAAGCTCGAACCCCGTCGTCGTCTTCTTCTTCTTCGTCTCAACTGTCTACTGTTTATTTTGCCGAGAGATATGTTCGCAGCCTAAGCAAAGCTGAAGAATCAGTGGCATTATCCAAAATGTTGTTGTTCAGAGCTGAACTTGGGCTTGCTTCTTTTCTTATCTTCTTCACTTGTCTTTCTTCTTCTCTCAACTCTGATGGCCTCTCCCTTCTCGCATTGAAAGCGGCCATTGTCAGCGATCCAACTGGAGTCCTTGACACATGGTCCGAGTCTGACTTGGTTCCGTGTCACTGGGGTGGGATCTCCTGCACTCACGGCCGAGTCACCGGGGTTTTTCTTCCCAACAGAAGCTTCACCGGCTACATTCCGTCTGAGCTCGGAGCTCTGGTCAATCTTCGCCAGCTTAGTCTGGCTAATAACAACTTCTCTAAACCCATTCCTTCTCGGCTCTTCAATGCCACCACTCTTCTCTCTCTAGACCTCTCTCACAACTCTCTCTCTGGTCCACTCCCGACCCAAGTCAAAGCCCTCAAATACCTAGTGCACTTGGATCTTTCTTCGAATCTCCTCAATGGGTCACTCCCTGAAGAGCTAGCCGAGCTGGAGAACCTCGCCGGAAGTTTGAATCTGTCACACAACCGGTTTTCCGGCGAGGTGCCCGCTTCGTATGGGAAGATTCCTTTGATGGTCAGCTTGGATCTCCGGCACAACAACCTCACTGGAAAGATTCCACAGATCGGGTCTCTTTTGAATCAGGGTCCCACAGCTTTCTCTGGAAACCCGAGTCTCTGCGGCTTTCCTCTGCAAACTCCATGCCCAGAGGCTTCAAACCCCAAAATCTTTGTAAACCCAGAAAACCCCAGAAAACCTAACCCTAGTTTTCCAAATGGCGCCGCCGATGAAGGCGAAGAAAGACAAAAAATAGGAGGCGGGTCGGTGGCCGTACCGCTAATTTCGGGCATTTCGGTCGTGGTTGGTGTGGTATCGGTATCGGTGTGGCTGTTCCGGAAAAAACGGAGCTCAGGTGAGGGTAAAATAGGAAGAGAAAAATTGGCGAAGGAGGTGGAAGATGAAGGGCAAAAAGGTAAATTCGTGGTGGTCGATGAGGGGTTTGGATTGGAATTAGAAGATTTGTTGAGGGCATCAGCGTACGTGGTGGGAAAAAGCAGGAGTGGGATAGTGTACAGGGTGGTGGCCGGGAGGGTATCAGGTGCATCGCCCACAGTTGTTGCTGTGAGGCGCCTCAGCGAAGGCGACGGCACGTGGCGCCTCAAGGACTTTGAATCCGAAGTGGAGGCCATTGCAAGGGTCCACCACCAAAACATCGTACGATTGAGAGCTTATTACTACGCAAACGATGAGAAACTACTAGTCTCTGATTTCATCCGCAACGGTAGCCTACATACCGCGCTGCACGGTGGGCCTTCCAATACATTGCCACCCTTGTCATGGGCAGCAAGGTTGAAGATTGCTCAAGGCGCTGCAAGGGGTCTAATGCACATCCATGAATGCAGCCCTCGGAAATACGTCCATGGGAACATAAAATCATCCAAAATCCTTCTTGACGATCATCTTCAACCTTACGTCTCTGGTTTTGGGCTCACCCGACTAGTCTCAGGAGCCTCCTCCAAGAAGCAGAACTCACACCAAGTCAGCACCAACTCTGTACTGGGCTCTAAAGCTTCAGCCAACTCTATCGCCTACTTAGCACCCGAGGCTCGTGTCTCCGGCACCAGGTTCACCCAGAAATGTGATGTCTACTCCTTTGGCATCGTCCTTATGGAGGTTCTAACTGCTCGGCTACCAGACGCCGGACCTGAGAACGATGGTAAAGGATTGGAAAGCCTTGTGAGGAAGGTTTTTCGGGATGAACGGCCATTGTCTGAGATCATAGACCCAGCACTGTTGCATGAGGTATATGCCAAGAAACAAGTTTTATCTGCATTCCATGTTGCTCTCAACTGCACAGAGCTGGACCCGGAGCTGCGGCCGAGGATGAGAACGGTTTCTGAGAGCCTTGACCGCATCAAATCACAATGA 2220 49.32 MSLLLFFYITLHFPFELLKSPYHPTLQMRKAALCVFFFLFKYFLYIENVRNLNSTPTTLLKARTPSSSSSSSSQLSTVYFAERYVRSLSKAEESVALSKMLLFRAELGLASFLIFFTCLSSSLNSDGLSLLALKAAIVSDPTGVLDTWSESDLVPCHWGGISCTHGRVTGVFLPNRSFTGYIPSELGALVNLRQLSLANNNFSKPIPSRLFNATTLLSLDLSHNSLSGPLPTQVKALKYLVHLDLSSNLLNGSLPEELAELENLAGSLNLSHNRFSGEVPASYGKIPLMVSLDLRHNNLTGKIPQIGSLLNQGPTAFSGNPSLCGFPLQTPCPEASNPKIFVNPENPRKPNPSFPNGAADEGEERQKIGGGSVAVPLISGISVVVGVVSVSVWLFRKKRSSGEGKIGREKLAKEVEDEGQKGKFVVVDEGFGLELEDLLRASAYVVGKSRSGIVYRVVAGRVSGASPTVVAVRRLSEGDGTWRLKDFESEVEAIARVHHQNIVRLRAYYYANDEKLLVSDFIRNGSLHTALHGGPSNTLPPLSWAARLKIAQGAARGLMHIHECSPRKYVHGNIKSSKILLDDHLQPYVSGFGLTRLVSGASSKKQNSHQVSTNSVLGSKASANSIAYLAPEARVSGTRFTQKCDVYSFGIVLMEVLTARLPDAGPENDGKGLESLVRKVFRDERPLSEIIDPALLHEVYAKKQVLSAFHVALNCTELDPELRPRMRTVSESLDRIKSQ* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21253139 21259663 - Vvi8g1385 Vvi8g1385 791608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1385 739 MobiDBLite consensus disorder prediction 342 366 - -
Vvi8g1385 739 Pfam Leucine rich repeat N-terminal domain 124 163 IPR013210 -
Vvi8g1385 739 SUPERFAMILY Protein kinase-like (PK-like) 445 733 IPR011009 -
Vvi8g1385 739 SUPERFAMILY L domain-like 125 329 - -
Vvi8g1385 739 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 111 739 - -
Vvi8g1385 739 Gene3D Phosphorylase Kinase; domain 1 414 521 - -
Vvi8g1385 739 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 111 739 - -
Vvi8g1385 739 Pfam Protein tyrosine and serine/threonine kinase 446 732 IPR001245 GO:0004672|GO:0006468
Vvi8g1385 739 ProSiteProfiles Protein kinase domain profile. 440 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1385 739 Gene3D Ribonuclease Inhibitor 126 265 IPR032675 -
Vvi8g1385 739 Gene3D Transferase(Phosphotransferase) domain 1 522 739 - -
Vvi8g1385 739 Gene3D Ribonuclease Inhibitor 266 332 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76791 PF07714 PK_Tyr_Ser-Thr 5.40E-27 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1385 - - vvi:100262317 1209.13