Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1390 ATGGAGCGAATTGCAGGAACCGGAGGTAGATCCGGGAGTACCGGAGGCGAGAAGGAGGAAATCGGAGCTGAGTCGTTCCTATTTGGCGAGGAAATTCAAAGACTGATGACTGGTCCGCCGGAGAATGGAAGCTCCTTCACGGCACTCCTCGGACTTCCGGCGAATCAAGCCATGGAGCTCTTGCACTCGCAGGAATCTGACACAGCTCCCGCCGAACTCTCCGGCGAGGCGTGGAGAGATAACCATATGAATCCTCACAAACTCTACTACTGTTCCCCGACATTTCCGGCGAACACCACTCTCATCGACCGCGCCGCGAGGTTCTCCGTCTTCGCCGCCGGCGAAAACTCGCCGGAAACTAGCTCAGTCCCGTCGAATTCCTCGCACAAAGTTAAGAATGAACCCACTGATACAGACTCGAACCCTAATTCATTACCGCCGTTGATCTCCAATCCAACGGTTGAGAACAAGAATCAGCGATCAACGAAGCGAAAGGAGCGAGAGAAGAAGGCCAAAGGGTCGACGAAAAAGTGCAAAAACGCATCGAATGAGACCTCCGAAGAGGCCGAGAAGCTTCCGTACGTTCACGTTCGAGCTCGTCGCGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATTAACGCCCGGATGAAGCTTCTTCAAGAGCTGGTCCCTGGTTGTAATAAGATTTCAGGTACAGCTTTAGTGCTGGATGAAATTATCAGCCACGTACAATCCCTACAACGCCAAGTAGAGTTCTTATCTATGAGACTTGCGGCAGTAAACCCGAGAATTGATTTCAACCTTGACAGTTTATTGGCTCCAGAAAGTGGATCTCTGGTCGACAGTAACTTCCCTAGCATGGTCATGCCACTGATGTGGCCAGATGTCCAAGCCAATGAAAACAGACAACCTTATCAACAGCTATGGAATGATGACACACTTCACCAGCCAGTTTGGGGAAGGGAAGAGGACGACCCCCATAATTTCATTGCTCCAGAGCACTCGCTTTTGAGTTATGACTCCTCGGCAAATTCAGGGTCTCTGCAGTCAAACCAGCTGAAAATGGAGCTGTGA 1095 51.05 MERIAGTGGRSGSTGGEKEEIGAESFLFGEEIQRLMTGPPENGSSFTALLGLPANQAMELLHSQESDTAPAELSGEAWRDNHMNPHKLYYCSPTFPANTTLIDRAARFSVFAAGENSPETSSVPSNSSHKVKNEPTDTDSNPNSLPPLISNPTVENKNQRSTKRKEREKKAKGSTKKCKNASNETSEEAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIISHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLLAPESGSLVDSNFPSMVMPLMWPDVQANENRQPYQQLWNDDTLHQPVWGREEDDPHNFIAPEHSLLSYDSSANSGSLQSNQLKMEL* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21302623 21308510 + Vvi8g1390 Vvi8g1390 791613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1390 364 CDD bHLH_AtBPE_like 193 278 - -
Vvi8g1390 364 Gene3D - 200 272 IPR036638 GO:0046983
Vvi8g1390 364 MobiDBLite consensus disorder prediction 1 20 - -
Vvi8g1390 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
Vvi8g1390 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 363 IPR024097 GO:0006355
Vvi8g1390 364 Pfam Helix-loop-helix DNA-binding domain 207 254 IPR011598 GO:0046983
Vvi8g1390 364 MobiDBLite consensus disorder prediction 173 190 - -
Vvi8g1390 364 MobiDBLite consensus disorder prediction 115 190 - -
Vvi8g1390 364 PANTHER TRANSCRIPTION FACTOR BHLH60 18 363 - -
Vvi8g1390 364 MobiDBLite consensus disorder prediction 115 157 - -
Vvi8g1390 364 SMART finulus 209 259 IPR011598 GO:0046983
Vvi8g1390 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 272 IPR036638 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15136 PF00010 HLH 2.10E-05 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1390 - - vvi:100241856 701.819