Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1395 ATGGCTAGCTTCTGCACATATCCTCTGTTCTTCTCTTTGACCTTCGCATTCTTCATCGTGGCCTCTGCTTCATCTGAAGCAGAGATCCTTCTCACATTTAAGGCCTCCATTGAAGACCCCATGAAGTATCTCTCCACATGGTCCAACACTTCTGAGACTCACCACTGTAACTGGACTGGAGTCACCTGCACCACCACACCACCTCTCTCTATCCCAGAAACCATAGGGTCACTGAAGAATCTGCAAGTTCTCAACTTGGGAAGCAACTTGCTTTCAGGTAGTGTTCCTTCTGTTTTTGGGAATTTCACTGAGCTTCTTGTTCTTGATTTGTCTCAAAATCGATTTTTGGTGAGTGAGATTCCTGGTGGCATTGGCAAGCTTGAGAAGCTTAAGCAGCTTCTACTCCAAAGCTCTGGTTTTTATGGTGAGATTCCTCAATCCTTTGCTGGCTTGCAGGGGTTAACCATTTTGGACCTCTCTCAGAACAATCTGACTGGTGGGGTACCTCAGACACTAGGAGCTTCTCTTAAGAACTTGGTATCTTTTGATGTTTCACAAAACAACCTTCTGGGTTCATTTCCCACTGGCATATGCCGAGGAAAAGGCCTCATAAACCTCAGCCTCCATACAAATTCCTTCAGTGGTTCAATACCCAACTCCATTAGTGAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCTGGTGATTTCCCAAATGGGTTATGGTCATTACCCAAAATCAAGCTCATTAGAGCTGAAAACAACAGATTTTCTGGGGAAATACCGGATTCCATATCAGTGGCTGCTCAGTTGGAGCAAGTTCAGATTGATAACAACAGCTTCACTAGTAAAATTCCTCAGGGCCTTGGGTCAGTCCGGAGCTTATATAGATTTTCTGCATCTCTTAATGGCTTCTATGGTGAACTTCCTCCAAATTTCTGTGACTCACCAGTTATGAGTATAATAAATCTCTCCCACAATTCGCTCTCTGGTCTAATTCCAGAGTTGAAGAAATGCCGGAAATTAGTCTCATTGTCTCTGGCGGACAACAGAAATCCGGAACTTTGTGGCCCAGGATTACCCAATTCTTGTTATGATGATGAGCCCATACATAAGGCTGGTGGTCTTACAAAATTAGCATGTGCCCTCATCTCTCTGGCTCTTGGTGCTGGAATTTTGATCATTGCAGCTGGGTTCTTTGTGATTTATCGGACTTCCCAGCGGAAATCTCAAATGGGTGTCTGGAGATCAGTTTTCTTCTACCCCCTTAGAGTCACAGAGCATGACTTGATCATGGGAATGGATGAGAAAAGCGCGGTAGGAAGTGGTGGAGCTTTTGGTAGAGTTTACATCATAAGCTTACCAAGTGGTGAGCTTGTGGCTGTCAAGAAGCTTCTCAATCCTGGGAGCCAGTCTTCAAAATCACTGAAGAATGAAGTAAAGACATTGGCCAAGATCAGGCATAAGAACATAGTCAAACTTCTGGGGTTCTGCCACTCCAGTGACTCTATCTTTCTGATATATGAGTTTCTGCAGAAGGGGAGCTTGGGGGATTTGATATGCAGACCAGATTTTCAGTTTCAATGGAGTACTAGATTGAGGATTGCCATTGGGGTTGCTCAAGGATTAGCATATCTTCACAAGGACTATGTTCCACATATACTTCACAGAAACCTCAAGTCCAAAAACATCCTTCTGGATGCAGATTTGGAACCAAAGCTCACGGATTTCGCTCTGGATCGGATTGTGGGAGAAACTGCATTTCAATCGACCATGGCTTCAGAATCTGCTTTCTCATGTTACATTGCACCAGAAAATGGATACAGCAAGAGAGCCACAGAACAAATGGATGTGTACAGCTTTGGTGTTGTGCTGCTAGAGCTCGTGACAGGCCGGCAAGCCGAGCAAGCAGAATCAGCAGAGTCTATTGATATTGTGAAGTGGGTTAGACGGAAAATCAACATTACCGATGGAGCTCTCCAAGTTCTTGACCCCAAGATTTCAAACTCTTCACAGCAAGAGATGCTGGGTGCTCTGGAAATGGCCCTGAGATGCACCTCTGTAATGCCTGAGAAAAGGCCGACCATGTTTGAAGTTGTGAGAGCACTTCAATCCCTCAGCTCAAAGACCCCCACATCCCAGATTTGGAGTTGTCCATTGGAACTTCAGATGAGCATTCATCAGCTCCAATCTGATGAACACTAA 2217 44.65 MASFCTYPLFFSLTFAFFIVASASSEAEILLTFKASIEDPMKYLSTWSNTSETHHCNWTGVTCTTTPPLSIPETIGSLKNLQVLNLGSNLLSGSVPSVFGNFTELLVLDLSQNRFLVSEIPGGIGKLEKLKQLLLQSSGFYGEIPQSFAGLQGLTILDLSQNNLTGGVPQTLGASLKNLVSFDVSQNNLLGSFPTGICRGKGLINLSLHTNSFSGSIPNSISECLNLERFQVQNNGFSGDFPNGLWSLPKIKLIRAENNRFSGEIPDSISVAAQLEQVQIDNNSFTSKIPQGLGSVRSLYRFSASLNGFYGELPPNFCDSPVMSIINLSHNSLSGLIPELKKCRKLVSLSLADNRNPELCGPGLPNSCYDDEPIHKAGGLTKLACALISLALGAGILIIAAGFFVIYRTSQRKSQMGVWRSVFFYPLRVTEHDLIMGMDEKSAVGSGGAFGRVYIISLPSGELVAVKKLLNPGSQSSKSLKNEVKTLAKIRHKNIVKLLGFCHSSDSIFLIYEFLQKGSLGDLICRPDFQFQWSTRLRIAIGVAQGLAYLHKDYVPHILHRNLKSKNILLDADLEPKLTDFALDRIVGETAFQSTMASESAFSCYIAPENGYSKRATEQMDVYSFGVVLLELVTGRQAEQAESAESIDIVKWVRRKINITDGALQVLDPKISNSSQQEMLGALEMALRCTSVMPEKRPTMFEVVRALQSLSSKTPTSQIWSCPLELQMSIHQLQSDEH* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21345707 21348717 - Vvi8g1395 Vvi8g1395 791618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1395 738 SMART LRR_typ_2 176 200 IPR003591 -
Vvi8g1395 738 SMART LRR_typ_2 151 175 IPR003591 -
Vvi8g1395 738 SMART LRR_typ_2 102 127 IPR003591 -
Vvi8g1395 738 SMART LRR_typ_2 78 101 IPR003591 -
Vvi8g1395 738 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vvi8g1395 738 Gene3D Ribonuclease Inhibitor 22 172 IPR032675 -
Vvi8g1395 738 Gene3D Ribonuclease Inhibitor 173 268 IPR032675 -
Vvi8g1395 738 Gene3D Ribonuclease Inhibitor 269 360 IPR032675 -
Vvi8g1395 738 Gene3D Phosphorylase Kinase; domain 1 432 514 - -
Vvi8g1395 738 ProSiteProfiles Protein kinase domain profile. 439 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1395 738 SUPERFAMILY Protein kinase-like (PK-like) 447 727 IPR011009 -
Vvi8g1395 738 SUPERFAMILY L domain-like 54 358 - -
Vvi8g1395 738 PANTHER - 6 70 - -
Vvi8g1395 738 PANTHER - 356 722 - -
Vvi8g1395 738 PANTHER - 71 354 - -
Vvi8g1395 738 CDD STKc_IRAK 444 710 - -
Vvi8g1395 738 Gene3D Transferase(Phosphotransferase) domain 1 515 721 - -
Vvi8g1395 738 Pfam Protein kinase domain 441 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1395 738 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Vvi8g1395 738 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 70 - -
Vvi8g1395 738 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 356 722 - -
Vvi8g1395 738 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 354 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76792 PF00069 Pkinase 1.20E-39 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1395 - - vvi:100248724 801.586