Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1404 ATGACTGACCCCTACTCAAAATTCTTCGCCGGTTGGTTCAAATTCAACCCTCTCCACCATTTCCCATCTGCAGAACCTCCATCACAGCCACCCTATGGCCACAGCTTGTACACCAATAGCTTCAGCAGCCACAGCAACTCCATTATCTATCAAACCCCGCCTCCATCTCCTCCTCTGAGAGAAGCCCTACCCCTTCTCAGTTTGAGCCCAACCAGGCATGAAGAAGACCAGCAGCAGCAACACTCCTCCTGCAGTAATGATGATGAAACTGTTACTGTTGCCCTACATATAGGTCTACCAAGCCCTAGTGCTGCAGAGATGGCCTCTATGCTCTCTTCTTCTTCAGAGATCACTGACAAAGATGGAGATGGTGATGTTTCTGGGTATCCCATCAACAGACTCAACAAGGGTCAGTATTGGATCCCCACCCCATCTCAGATCCTTATTGGTCCTACACAGTTCTCATGTCCTGTTTGCTGCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCTGAATCTCTAAGGGGCACTCAGCCAACGGGCATGCTTAGGCTTCCATGCTATTGCTGCGCACCAGGATGCAGGAACAATATAGACCACCCGAGGGCCAAGCCGCTTAAAGATTTTAGAACCCTTCAAACACATTACAAGAGGAAGCATGGGATCAAACCTTTCATGTGTAGAAAATGTGGGAAGGCATTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTACTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTCAAGGACCACATAAAGGCTTTTGGGAATGGCCATGCAGCGTATGGCATAGATGGCTTTGAAGAAGAAGACGAACCTGCATCTGAAGTAGAACAAGATGATGAGTCCATGCAGTGA 948 48.0 MTDPYSKFFAGWFKFNPLHHFPSAEPPSQPPYGHSLYTNSFSSHSNSIIYQTPPPSPPLREALPLLSLSPTRHEEDQQQQHSSCSNDDETVTVALHIGLPSPSAAEMASMLSSSSEITDKDGDGDVSGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDDESMQ* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21424266 21426648 - Vvi8g1404 Vvi8g1404 791627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1404 315 PANTHER ZINC FINGER PROTEIN WIP2 1 315 IPR043584 GO:0003700|GO:0010468
Vvi8g1404 315 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Vvi8g1404 315 Gene3D Classic Zinc Finger 216 291 - -
Vvi8g1404 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 258 IPR013087 -
Vvi8g1404 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Vvi8g1404 315 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 315 - -
Vvi8g1404 315 SUPERFAMILY beta-beta-alpha zinc fingers 220 258 IPR036236 -
Vvi8g1404 315 SUPERFAMILY beta-beta-alpha zinc fingers 150 176 IPR036236 -
Vvi8g1404 315 Gene3D Classic Zinc Finger 153 176 - -
Vvi8g1404 315 SMART c2h2final6 154 176 IPR013087 -
Vvi8g1404 315 SMART c2h2final6 238 258 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1404 Vvi13g1163 ECH
Vvi6g176 Vvi8g1404 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15137 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1404 - - vvi:100255592 636.721