Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1416 ATGAATCACTTAACTGTTGTGACTGAGGATGCTTTTGCCAGTTTGCTTGAACTTGCTGCAAACAATGACTTTGGGCGCTTTAAACAATCAATTGAGCGCGAGCCTTCTGGTGTTGATGAAATTGGACAATGGTATGGCCGTCAGAAGGGCTCAAAACAGATGGTCCTTGAGTATAGAACTCCCTTAATGGTAGCTGCTACATATGGTAGTATTGATGTAATGAAGCTTATTCTTTCTCTATCAGACTCTGACGTGAATCGATTCTGTGGTCTTGATAAAAGTACTGCACTTCATTGTGCTGCATCTGGTGGATCTGTCAATGCTGTTGATGTGGTGAAACTGCTTTTACTAGTGGGTGCTGATCCTAATTCACTTGATGCCAATGGTCATCGGCCTGTTGATGTACTTGTTGTTCCTCCAAAGCTTCAGGATTTAAATGACCTCCCTATTTCTTGTGCATCAGAGAAGAAAGAATATCCTGTTGACCCATCTCTCCCTGATATCAAGAATAGCATCTATGCAACAGATGAATTTCGAATGTTCTCATTCAAGGTTCGACCTTGTTCTCGTGCCTACTCCCATGATTGGACCGAGTGCCCTTTTGTTCATCCAGGTGAAAATGCTCGAAGAAGGGACCCAAGAAAATTCCACTACAGCTGTGTCCCTTGTCCTGATTTCCGAAAGGGAGCTTGCAGGCGTGGTGATATGTGTGAGTATGCTCATGGAGTTTTTGAGTGCTGGCTCCATCCAGCTCAGTATAGGACAAGGCTCTGCAAGGATGGTACAAATTGCAATCGAAGAGTCTGCTTCTTTGCTCATACAACTGAAGAACTCCGGCCATTGTATATGTCAACTGGTTCTGCTGTTCCTTCTCCTCGCCCAAGTTCTTCCACGGCCACTGCTATGGATTTTGCAACAGCCATGAACCTCATACCTGGCTCTCCTTCATCTGTCTCTGTCATGTCTCCTTCGCCGTTCACCCCCCCATTGTCTCCATCGGCCAATGGTGTTTCACACTCTTCCATGGGTTGGGCCCAACCAAATGTTCCAACCTTGCATCTCCCTGGTAGCAATCTTCAGTCCAGCCGCTTGAGATCATCCCTTAATGCAAGGGACATCCCAGCTGAAGACATCAATTTGATGCTGGATTTTGATATACAGCAACATCAACTGCTAAATGAACTGTCTTGCCTCTCTCAACCATGTGTTAACTCTAATTCTTTGAACCGTTCTGGACGGTCAAAAACCCTAACCCCCTCAAACCTTGATGAGCTCTTTTCAGCTGAGAGCTCATCTCCTCGGTACTCTGATCAAGCATTGGCATCTGCTGTTTACTCCCCAACGCATAAATCAGCGGTTCTAAATCAATTTCAGCAGCAGCAGAGCATGATGTCCCCGCGAAGTATGGAACCTATCTCGCCAATGAGCTCTCGGGCCTCTATGTTTGCTCAACGTGAGAAGCAGCAACAACAACAGTTTCGTAGCCTGAGCTCTCGGGACCTTGGCTCTAACTCCTCTGCCATTGTTGGTTCACCCATAAATTCCTGGTCAAAATGGGGATCCTCCAACGTTAAGCCCGACTGGGCAATGAATGCAAATGAGTTGGGTGGGCACAGAAGATCAAATTCATTTGAGCTTGGGAACAATGGAGAAGAGCCTGATCTATCATGGGTTCAATCACTCGTCAAAGAATCTCCTACGGAGACCAAAGAGAAGGCGGCAACACCTGCCTTGGACACTGCTGAGGCTTCATCATCCAGTGATGGTTCCAATTTGAATTCTCAAATTGAATCAATCGACCATGCTGTTCTTGGGGCATGGCTTGAGCAGATGCAGCTCGATCAGCTCGTGGCTCAGTAA 1860 46.4 MNHLTVVTEDAFASLLELAANNDFGRFKQSIEREPSGVDEIGQWYGRQKGSKQMVLEYRTPLMVAATYGSIDVMKLILSLSDSDVNRFCGLDKSTALHCAASGGSVNAVDVVKLLLLVGADPNSLDANGHRPVDVLVVPPKLQDLNDLPISCASEKKEYPVDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTTEELRPLYMSTGSAVPSPRPSSSTATAMDFATAMNLIPGSPSSVSVMSPSPFTPPLSPSANGVSHSSMGWAQPNVPTLHLPGSNLQSSRLRSSLNARDIPAEDINLMLDFDIQQHQLLNELSCLSQPCVNSNSLNRSGRSKTLTPSNLDELFSAESSSPRYSDQALASAVYSPTHKSAVLNQFQQQQSMMSPRSMEPISPMSSRASMFAQREKQQQQQFRSLSSRDLGSNSSAIVGSPINSWSKWGSSNVKPDWAMNANELGGHRRSNSFELGNNGEEPDLSWVQSLVKESPTETKEKAATPALDTAEASSSSDGSNLNSQIESIDHAVLGAWLEQMQLDQLVAQ* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21572152 21574979 - Vvi8g1416 Vvi8g1416 791639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1416 619 Pfam Ankyrin repeats (3 copies) 57 124 IPR002110 GO:0005515
Vvi8g1416 619 SMART c3hfinal6 252 275 IPR000571 GO:0046872
Vvi8g1416 619 SMART c3hfinal6 217 243 IPR000571 GO:0046872
Vvi8g1416 619 Gene3D - 217 280 - -
Vvi8g1416 619 SUPERFAMILY Ankyrin repeat 57 135 IPR036770 -
Vvi8g1416 619 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vvi8g1416 619 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vvi8g1416 619 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vvi8g1416 619 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vvi8g1416 619 ProSiteProfiles Zinc finger C3H1-type profile. 222 244 IPR000571 GO:0046872
Vvi8g1416 619 MobiDBLite consensus disorder prediction 562 593 - -
Vvi8g1416 619 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 222 242 IPR000571 GO:0046872
Vvi8g1416 619 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 144 466 - -
Vvi8g1416 619 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 146 - -
Vvi8g1416 619 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 464 617 - -
Vvi8g1416 619 MobiDBLite consensus disorder prediction 579 593 - -
Vvi8g1416 619 PANTHER UNKEMPT FAMILY MEMBER 464 617 IPR045234 -
Vvi8g1416 619 PANTHER UNKEMPT FAMILY MEMBER 1 146 IPR045234 -
Vvi8g1416 619 PANTHER UNKEMPT FAMILY MEMBER 144 466 IPR045234 -
Vvi8g1416 619 MobiDBLite consensus disorder prediction 483 504 - -
Vvi8g1416 619 Gene3D - 3 138 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g207 Vvi8g1416 ECH
Vvi8g1416 Vvi13g1150 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15139 PF12796 Ank_2 1.20E-08 CL0465 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1416 - - vvi:100258822 1059.67