Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1419 ATGCACAAACAAACTGAAAGAAAAAACCAACCAGAATCTAAAGCAGATAGCAACAATCCATACTCGATCTGCTCTCAACCTTGGTGGCGTGGGCTTGGGAATGATGTCATCTCTCCAGATGTTTTAGGTGAAAGTTCACCAAATTCAGCTTCAGCAGAACACCCAAATGGTGGTGTAGGAACTATAGCCATCAAGTCGCGAGCCAAAGTTGTGACGGATAATGGAAATGATCCTGAAAAAGAAATGAAAATTACTTTAGCCTCGCAATCAGATGGAAGCTGTGGACAAGAACAAAAGCATCCTCAGCAAGCTGTATCAATGATGCCTATGACTATGGCTGAATACCACCTTGCACCACCTTCCCAGCTGGAACTTGTTGGCCACTCAATTGCGTGTGCATCATATCCATATTCTGAACCTTATTACACGGGAGTCATTCCTGCTTATGGACCTCAGGGTTTGGTACAATCTCAATTTCTTGGTGTGAATGTGGCTAGAATGGCTTTGCCTATTGAAATGGCAGAGGAACCTGTTTATGTGAATGCAAAACAGTATCATGGGATTCTGAGGCGAAGACAATCACGGGCGAAGGCCGAGCTGGAAAAAAAACTGATAAAAGTTAGGAAGCCATATCTTCATGAATCAAGGCACCAGCATGCTATGAGAAGGGCAAGAGGATGTGGAGGCCGTTTTCTCAACACAAAGAAGCTTGATTCTAATGCATCGTATGACATGCCTGACAAGGGCTCTGATCCAGATGTAAACCTTTCAACACGACCCATCAGCTCATCAGTCTCTGAATCTCTGCCCTCCAATTCTTCCCGAAATGAGGATTCCCCCACCAGTCATCTAGATGCAAGAGGTCCCTCTGTGCAGGAATTGCACAATAGGCAAATAGCCTCCCATGGAAATGGCAACAGCTGTTATCCACACAACCAGGGATTTCAGTTGTCGACATACCATTCCCTTAAAGATGATCGCGTGGAAGAAGGAGACCACGCAGGGCGGCAGCATGAGAGAATTCTGGTGAATAGGGCCCCCCACAGGGCCCTAACCATCAAATGA 1065 45.82 MHKQTERKNQPESKADSNNPYSICSQPWWRGLGNDVISPDVLGESSPNSASAEHPNGGVGTIAIKSRAKVVTDNGNDPEKEMKITLASQSDGSCGQEQKHPQQAVSMMPMTMAEYHLAPPSQLELVGHSIACASYPYSEPYYTGVIPAYGPQGLVQSQFLGVNVARMALPIEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDSNASYDMPDKGSDPDVNLSTRPISSSVSESLPSNSSRNEDSPTSHLDARGPSVQELHNRQIASHGNGNSCYPHNQGFQLSTYHSLKDDRVEEGDHAGRQHERILVNRAPHRALTIK* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21597065 21602704 + Vvi8g1419 Vvi8g1419 791642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1419 354 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Vvi8g1419 354 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 28 348 IPR001289 GO:0003700|GO:0006355
Vvi8g1419 354 MobiDBLite consensus disorder prediction 255 286 - -
Vvi8g1419 354 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Vvi8g1419 354 MobiDBLite consensus disorder prediction 41 55 - -
Vvi8g1419 354 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 28 348 - -
Vvi8g1419 354 Gene3D - 174 235 - -
Vvi8g1419 354 MobiDBLite consensus disorder prediction 1 65 - -
Vvi8g1419 354 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Vvi8g1419 354 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Vvi8g1419 354 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Vvi8g1419 354 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Vvi8g1419 354 MobiDBLite consensus disorder prediction 237 288 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1419 Vvi13g1144 ECH
Vvi6g216 Vvi8g1419 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15140 PF02045 CBFB_NFYA 7.50E-27 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1419 K08064 - tcc:18598988 410.994