Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1429 ATGGGCACGCCTGAATTCCCAGATCTAGGAAAGCACTGCACCGTCGACGATTGCAAGCAAATTGATTTCTTACCCTTTACCTGCGATCGCTGCCACCAGATATTCTGTTTGGAGCATCGAAGCTACATTAAACATCACTGTCCAACTGCTGATAGAAAAGACGTCACTGTTGTCATCTGCCCACTCTGTGCTAAAGGAGTTCGACTTATTCCAGATGAAGATCCAAACGTCACATGGGAGACACATGTTAACACTGAGTGTGATCCATCAAACTATGAGAAAGCCACAAAAAAGAAAAAATGCCCTGTCTCTGGCTGCAGGGAGATCCTAACATTCTCTAATACACTTAAGTGCCGAGACTGCACAATAGACCACTGCTTGAAGCACCGGTTTGGACCTGATCACAAATGCCCTGGACCCAAGAAGCCCGAGGCTGCATTCCCATTTATAGGTCTTTTAAATAGGAGTAAAAAGGAAGACTCAAAACCCAGCCGTGCTCCAACATCTTCATCTAAATGGGCTACAAGCTTTCTCAATGTGGCTTCAAATGTTCGAGCCTCTGCTGAGGCAGGAATGACAAAGTTGACTAGCGAATTCAGCCAAGCATGGCAGACGACAAGGGATGGAGTGACAATTGATGTATGCCCAAAATGTAGTAGAGGATTTCGTGATCCAGTGTCTCTTGTTGAACATGTGGAGAGGGACCATGGTGGTACTTCAAAAGCTTAG 729 45.68 MGTPEFPDLGKHCTVDDCKQIDFLPFTCDRCHQIFCLEHRSYIKHHCPTADRKDVTVVICPLCAKGVRLIPDEDPNVTWETHVNTECDPSNYEKATKKKKCPVSGCREILTFSNTLKCRDCTIDHCLKHRFGPDHKCPGPKKPEAAFPFIGLLNRSKKEDSKPSRAPTSSSKWATSFLNVASNVRASAEAGMTKLTSEFSQAWQTTRDGVTIDVCPKCSRGFRDPVSLVEHVERDHGGTSKA* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21708516 21711250 - Vvi8g1429 Vvi8g1429 791652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1429 242 Gene3D - 80 148 IPR035896 -
Vvi8g1429 242 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Vvi8g1429 242 Gene3D - 2 60 IPR035896 -
Vvi8g1429 242 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vvi8g1429 242 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Vvi8g1429 242 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 210 - -
Vvi8g1429 242 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 210 242 - -
Vvi8g1429 242 ProSitePatterns Zinc finger C2H2 type domain signature. 215 236 IPR013087 -
Vvi8g1429 242 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vvi8g1429 242 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Vvi8g1429 242 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vvi8g1429 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 241 IPR013087 -
Vvi8g1429 242 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 210 - -
Vvi8g1429 242 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 210 242 - -
Vvi8g1429 242 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vvi8g1429 242 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15141 PF01428 zf-AN1 1.60E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1429 - - vvi:100255506 473.781