Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1431 ATGAAAAAAAAAACCACGTGGAAAATCATTTTCTTTAATTTGGGAAATTTTATCGGGGGCTCGATCTTAAAACCCTCAACACCCCGTCTTTGCATCATTGGCAGCAGTTCTACAGCCCACACCGCTTCCATCTACGCCTCCCAAGCCCAGCTTCGTCCCATCTTCCTCGAAGGTTGGATGGCCAACGACATTGCTCTAGGCGGCCAGCTCACCACTACATCTGACGTTGAGAACTTCCCTGATTTCCCTGATGGTAATAACGATAATGAAATCATGGATCGTTGTCGCGCCCAGTCCCTCCGCTTCGGCATCGAGATTTTCACTAAAACTGTCACCAGAGTCGATTTTTCCTCCACTCCTTTTAAAGTCTTCGTCAATTCCAAGACCGTCTTGGTTGATGCCGTCATCGTTGCCATCGACACCGTTACCAAGCACTTGCCCTTTCCCGGCTTCGATGATAGTTTCAAGATGGAGATCGGAGGAGTAGGGCCAAAGCCTTCAAAACACACGGGAGATCAGGTTTGTCAAATCTGTAACGACAATGTTGGCACAACTGTAGACGGTGAACCCTTCATTGCTTGCAGCGTTTGTGCATTTCCTGTTTGCCGGCCCTGTTACGAGTATGAGAGAAAAGATGGCAATCAGTCTTGTCCTCAGTGCAAGACTAAATACAAGAGGCATAAAGGGAGTCCTCCGATTCATGGGGAGGATGTGGAAGATGGTGATATGGATGATGTAGCTAAAGATTTTAAGTATTCTTCACGGGATCAAGGTGAGAAGCAAAAGATAGCAGAGCGCTCGCTGAGTTGGCATATGAGCCATGGACAAGGAGAGGATGTTGTGCCTCCAAACTATGATAAAGAGGTTTCTCTTAACCATATTCCTTTGCTCACCAATGGACCCTCGGTTTCAGGGGAGTTGTCAGCTGCATCTCCTGAGCGTCTATCAATGACGTCTCCTGAAGCTGGGCTTGGGGTAAAGCGTGTGTGTCCTCTACCTTATGCAGCAGCTAATATTAGAGTGGGAGATCCAGGGAGAGAGTTTGGATCAGCAGGGTTTGGAAAAGTAGCTTGGAAAGAGCGAGTTGATGGTTGGAAGATGAAGCAGGAAAAGAATGGAGCTCCAATGAGTGTTAGTCATGCACCTTCTGAAGGCAGGGGTGGTCTTGCACCTTCAGAAGGCAGGGGTGGTGTGGATATTGATGCCAGCACTGATGTGGTTATGGATGACACTTTATTAAATGATGAAGCCCGCCAGCCTCTATCAAGGAAGGTTTCTATTCCCTCCTCCAGGATCAATCCTTATAGGATGGTCATAGTTCTGCGACTTATTATTCTTTGCATTTTTTTACATTACCGTATAACAAATCCAGTTCCCAATGCTTTCGCTTTGTGGTTAATATCCGTGATTTGTGAGATATGGTTTGCAATATCATGGATATTGGATCAGTTCCCAAAATGGCTTCCTGTGAACCGTGAGACATATCTTGACAGGCTGGCTCTGAGGTATGACCGAGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATTTTTGTCAGTACTGTTGATCCTCTGAAGGAACCCCCACTTGTTACAGCCAATACTGTCCTTTCTATTCTTGCAGTTGACTACCCAGTCGACAAAGTTTCTTGCTATGTCTCAGATGATGGATCTGCTATGCTGACATTTGAAGCTCTGTCTGAAACTTCAGAGTTTGCAAGGAAATGGGTTCCTTTCAGCAAGAAATATAACATCGAGCCACGAGCTCCGGAATGGTACTTTGCACAGAAGATTGACTATTTAAAGGATAAAGTACAACCATCGTTTGTGAAAGACCGCAGAGCTATGAAGAGAGAATATGAGGAGTTCAAAATTCGTGTCAATGCACTTGTTGCAAAGGCACAGAAGGTTCCCGATGAAGGATGGATAATGCAAGATGGTACACCTTGGCCTGGAAATAACACCAGAGATCATCCAGGAATGATCCAGGTTTTCTTGGGCCATAGTGGAGGACTTGACACTGAAGGTAATGAGCTTCCACGGTTAGTCTACGTCTCTCGTGAGAAGCGGCCTGGATTTCAGCATCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGTGTATCAGCAGTCCTCACCAATGGGCCCTATTTGCTGAATCTTGACTGTGACCATTATATAAACAACAGCAAGGCTTTGCGGGAGGCTATGTGTTTTCTAATGGATCCAAACCTAGGAAAATCAGTCTGTTATGTTCAATTTCCACAGAGATTTGATGGGATTGATAAGAGTGATCGATATGCCAACCGTAACACTGTTTTCTTTGACATAAATCTGAGAGGCTTGGATGGCATCCAAGGCCCTGTATATGTGGGTACAGGATGTGTTTTCAACAGACCAGCCTTGTATGGTTATGAGCCTCCTGTCAAGCCTAAGCATAAGAAACCAGGTCTGTTCTCTTCATGCTTTGGTGGATCACAAAAGAAGAGTTCCGGATCAAGTAAGAAGGATTCCAGTAAGAAGAAATCAGGCAAGCAGTTGGATCCCACAGTGCCAATATTCAATCTAGAAGATATAGAAGAAGGGCTGGAAGGTGCTGGATTTGATGATGAGAAATCACTGCTCATGTCACAAATGAGCCTAGAGAAAAGGTTTGGTCAATCTGCTGTATTTGTTGCTTCAACACTAATGGAAAATGGTGGTGTTCCACAGTCTGCTGCTCCTGAAATCCTCCTCAAAGAAGCTATTCATGTTATTAGCTGTGGATATGAGGACAAAACAGACTGGGGAAATGAAATAGGGTGGATCTATGGTTCTGTTACAGAGGATATTCTTACTGGATTCAAGATGCATGCCCGAGGATGGCGGTCAATTTATTGCATGCCACAGCGTCCAGCCTTCAAAGGTTCTGCCCCCATTAACCTTTCTGATCGTCTGAATCAAGTGCTTCGATGGGCTTTGGGCTCAGTTGAAATTCTTCTCAGTCGGCATTGCCCCATATGGTATGGTTATGGTGGAAGGCTGAAATGGCTTGAGAGATTTGCTTATGTTAACACCACCATCTACCCTGTCACAGCCATTCCACTTCTTGCATATTGCACGTTGCCAGCTGTCTGTCTACTCACCGGAAAGTTCATTATTCCACAGATTAGTAACTTCGCCAGCATCTGGTTTATATCCCTCTTTCTTTCCATCTTTGCCACGGGTATATTGGAAATGAGATGGAGTGGTGTGGGGATTGATGAATGGTGGAGAAATGAACAGTTTTGGGTCATTGGAGGTGTTTCTGCTCACCTTTTTGCTGTTTGCCAAGGCCTGCTCAAAGTCCTTGCTGGCATCGATACCAATTTCACTGTCACATCCAAGGCATCTGACGAAGAGGGGGACTTTGCTGAGCTGTATATGTTCAAATGGACAACTCTCCTCATCCCACCAACCACTCTTCTCATAATCAATTTGGTTGGAGTGGTTGCTGGAATCTCCTATGCCATTAACAGTGGCTACCAGTCTTGGGGTCCTCTCTTTGGCAAGCTATTTTTTGCTTTCTGGGTGATTATTCATCTCTATCCCTTCCTTAAAGGTCTAATGGGACGCCAGAATCGGACTCCTACAATCGTTGTTGTGTGGTCAATTCTCCTTGCTTCTATCTTTTCCTTGTTATGGGTCAGGATTGATCCTTTTACAACCCGTGTGACTGGCCCAGATGTTGAACAGTGTGGAATCAACTGCTAG 3732 45.31 MKKKTTWKIIFFNLGNFIGGSILKPSTPRLCIIGSSSTAHTASIYASQAQLRPIFLEGWMANDIALGGQLTTTSDVENFPDFPDGNNDNEIMDRCRAQSLRFGIEIFTKTVTRVDFSSTPFKVFVNSKTVLVDAVIVAIDTVTKHLPFPGFDDSFKMEIGGVGPKPSKHTGDQVCQICNDNVGTTVDGEPFIACSVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPPIHGEDVEDGDMDDVAKDFKYSSRDQGEKQKIAERSLSWHMSHGQGEDVVPPNYDKEVSLNHIPLLTNGPSVSGELSAASPERLSMTSPEAGLGVKRVCPLPYAAANIRVGDPGREFGSAGFGKVAWKERVDGWKMKQEKNGAPMSVSHAPSEGRGGLAPSEGRGGVDIDASTDVVMDDTLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETSEFARKWVPFSKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNALVAKAQKVPDEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPYLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDKSDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRPALYGYEPPVKPKHKKPGLFSSCFGGSQKKSSGSSKKDSSKKKSGKQLDPTVPIFNLEDIEEGLEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAAPEILLKEAIHVISCGYEDKTDWGNEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPVTAIPLLAYCTLPAVCLLTGKFIIPQISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVCQGLLKVLAGIDTNFTVTSKASDEEGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC* 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21721903 21731344 - Vvi8g1431 Vvi8g1431 791654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1431 1243 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 632 806 IPR029044 -
Vvi8g1431 1243 Coils Coil 613 633 - -
Vvi8g1431 1243 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 166 1243 - -
Vvi8g1431 1243 SUPERFAMILY FAD/NAD(P)-binding domain 28 140 IPR036188 -
Vvi8g1431 1243 SUPERFAMILY Nucleotide-diphospho-sugar transferases 529 1059 IPR029044 -
Vvi8g1431 1243 CDD mRING-HC-C4C4_CesA_plant 173 223 - -
Vvi8g1431 1243 Pfam Cellulose synthase 515 1236 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi8g1431 1243 Pfam Zinc-binding RING-finger 165 241 IPR027934 -
Vvi8g1431 1243 SUPERFAMILY RING/U-box 163 241 - -
Vvi8g1431 1243 ProSiteProfiles Zinc finger RING-type profile. 175 221 IPR001841 -
Vvi8g1431 1243 PRINTS Pyridine nucleotide disulphide reductase class-II signature 29 51 - -
Vvi8g1431 1243 PRINTS Pyridine nucleotide disulphide reductase class-II signature 67 82 - -
Vvi8g1431 1243 PRINTS Pyridine nucleotide disulphide reductase class-II signature 133 141 - -
Vvi8g1431 1243 MobiDBLite consensus disorder prediction 822 848 - -
Vvi8g1431 1243 PANTHER CELLULOSE SYNTHASE 166 1243 - -
Vvi8g1431 1243 Gene3D - 23 160 IPR036188 -
Vvi8g1431 1243 MobiDBLite consensus disorder prediction 370 395 - -
Vvi8g1431 1243 MobiDBLite consensus disorder prediction 223 243 - -
Vvi8g1431 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 249 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1431 K10999 - vvi:100245168 2187.92