Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1438 ATGGCATTTGTATGCCTGTTGTCTCTTGTGCTAATGGGGTCTCTGTCAATTTCACAAGTTGTGGATGCTCAGCTTCATGATCAAGCCACATTGTTAGCAATTAACAAAGAGCTTGGAGTACCTGGGTGGGATGTCAACAACTCAGACTACTGCTCTTGGCGAGGCATTGGTTGTGCAGCGGACGAGTTGATTGTGGAGAGGCTTGATCTTTCTCACCGTGGCCTCCGAGGTAACTTGACTCTCATTTCTGGGCTCAAATCTCTGAAGTCGCTTGACCTTTCTGATAATAATTTCCATGGATCAATTCCTTCAATTTTTGGGAATTTATCCGAGCTTGTGTTTCTGGATTTATCTTGGAATAAGTTTGGCAACTCAATTCCTATAGAGTTGGGTAGCCTCAGGAACCTTAGATCATTGAACCTTTCCAATAACTTGCTCATAGGAGAAATACCTGACGAACTTCAGAGCCTAGAAAAACTGCAGGAGTTTCAAATATCTGGCAATAAATTCAATGGTTCTATCCCAATTTGGGTGGGGAACTTGACCAATCTGAGAGTTTTCACAGCCTATGAGAATGAATTAGCTGGTAAAATTCCAGATAATCTGGGGTCCCATTCAGAACTTCAGCTGTTGAACCTTCACTCCAACCAGCTTGAAGGGGCGATACCAGATACCATTTTTGCTTCAGGGAAGCTGGAAGTTTTGGTTCTGACACAGAATGAATTAACTGGCAATCTACCTGAATTGGTTGGGAAATGCAAGGGTCTTTCAAATATCCGGATTGATAATAACAATCTCTCTGGTGAGATTGTCCCAGAGTTTGCTCAGTGCTCTAATCTCACTCTCTTGAATTTAGCCTCAAATGGGTTCACAGGAATGATCCCTCCAGGACTTGGGCAGCTCACAAATTTGCAGGAACTGATTGTCTCCGGTAACAGTCTGTTTGGAGATATTCCGGAATCAATTCTTAGGTGCAAGAATCTGAACAAGCTTGACCTGAGCAATAACAGATTCAATGGCACAATTCCTGGAGATCTCTGCAACACATCGAGACTGCAGTATCTGCTGTTGAGTCAGAATTCAATAAGAGGGGAGATACCTCATGAGATTGGGAATTGTGTAAAACTGCTTGAATTGCAAATGGGCAGTAACTATCTAACTGGAAGTATCCCTCCTGAGATTGGTCACATCAAGAACTTACAGATAGCCTTGAATTTGAGCTTCAATCATCTCCATGGACTGTTGCCCCTTGAATTAGGGAAGCTTGACAAGTTGGTTTCTTTGGATCTATCTAATAATCAGCTCTCTGGGAATATTCCATCTGCACTGAAGGGTATGCTGAGTTTGATAGAGGTTAATTTCTCGAATAATTTATTCACTGGCCCAGTTCCCACCTTTGTACCATTTCAAAAGAGCCCGAATTCCAGCTTTTTGGGGAATAAAGGGCTATGTGGTGAGCCATTGAGTTCTTCCTGTGGGACTAATGGTTCTGATCACGAGAGCTACCATCACAAGGTTTCTTACAGGATTATTTTAGCCGTTATTGACTTTGATGCTGTGGTTAAGGCTACACTAAAGGATTCAAATAAGCTTAACAGCGGGACTTTTAGCACTGTCTACAAGGCAGTTATGCCTTCTGGGCTGATTCTATCAGTGAAGAGTCTGAGATCAATGGATCGAACCATCATTCATCACCAGAACAAGATGATTAGAGAGCTTGAAAGGCTGAGCAAACTCTGTCATGATAACCTAATGAGACCTATTGGATTTGTAATCTATGAAGATGTTGCTCTCTTGTTACATAATTACTTACCCAATGGGACATTAGCTCAGTTTCTTCATGATCCAACAAAGATATCAGAATATGAACCTGACTGGCCTACAAGACTCAACATTGCTACTGGAGTAGCAGAAGGGTTGGCTTTCCTTCATCATGTGGCAATTATTCATCTTGACATCTCTTCGGGAAACATACTTCTAGATGCTGATTTCAAGCCTTTGGTGGGAGAGATTGAGATATCAAAACTCCTAGATCCATCCAAAGGCACTGCAAGTATCAGTGCAGTTGCAGGTTCATTTGGTTACATTCCTCCAGAATATGCATATACTATGCAAGTTACAGCACCTGGAAACGTATATAGCTATGGGGTTGTTCTGCTTGAGATCCTTACTACCCGACTACCGGTTGATGAGGCTTTTGGTGAAGGAATAGATTTGGTGAAGTGGGTTCACACTGCTCCAGCAAGAGGGGAAACACCAGAGCAGATACTGGATGCAAGGCTTAGCACGGTCTCATTCGCTTGGAGGAAAGAAATGCTTTCTGCCCTTAAGGTTGCCTTACTCTGTACCGACAACACTCCTGCCAAACGGCCTAAAATGAAAAAGGTGGTGGAAATGCTCCAAGAAATAAAGCAAAACTGA 2421 42.59 MAFVCLLSLVLMGSLSISQVVDAQLHDQATLLAINKELGVPGWDVNNSDYCSWRGIGCAADELIVERLDLSHRGLRGNLTLISGLKSLKSLDLSDNNFHGSIPSIFGNLSELVFLDLSWNKFGNSIPIELGSLRNLRSLNLSNNLLIGEIPDELQSLEKLQEFQISGNKFNGSIPIWVGNLTNLRVFTAYENELAGKIPDNLGSHSELQLLNLHSNQLEGAIPDTIFASGKLEVLVLTQNELTGNLPELVGKCKGLSNIRIDNNNLSGEIVPEFAQCSNLTLLNLASNGFTGMIPPGLGQLTNLQELIVSGNSLFGDIPESILRCKNLNKLDLSNNRFNGTIPGDLCNTSRLQYLLLSQNSIRGEIPHEIGNCVKLLELQMGSNYLTGSIPPEIGHIKNLQIALNLSFNHLHGLLPLELGKLDKLVSLDLSNNQLSGNIPSALKGMLSLIEVNFSNNLFTGPVPTFVPFQKSPNSSFLGNKGLCGEPLSSSCGTNGSDHESYHHKVSYRIILAVIDFDAVVKATLKDSNKLNSGTFSTVYKAVMPSGLILSVKSLRSMDRTIIHHQNKMIRELERLSKLCHDNLMRPIGFVIYEDVALLLHNYLPNGTLAQFLHDPTKISEYEPDWPTRLNIATGVAEGLAFLHHVAIIHLDISSGNILLDADFKPLVGEIEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEAFGEGIDLVKWVHTAPARGETPEQILDARLSTVSFAWRKEMLSALKVALLCTDNTPAKRPKMKKVVEMLQEIKQN* 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21784497 21787274 - Vvi8g1438 Vvi8g1438 791661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1438 806 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 514 804 - -
Vvi8g1438 806 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 266 - -
Vvi8g1438 806 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 262 515 - -
Vvi8g1438 806 Pfam Leucine Rich Repeat 87 109 IPR001611 GO:0005515
Vvi8g1438 806 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515
Vvi8g1438 806 Pfam Leucine Rich Repeat 424 445 IPR001611 GO:0005515
Vvi8g1438 806 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 262 515 - -
Vvi8g1438 806 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 266 - -
Vvi8g1438 806 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 514 804 - -
Vvi8g1438 806 Gene3D Ribonuclease Inhibitor 229 493 IPR032675 -
Vvi8g1438 806 Gene3D Ribonuclease Inhibitor 175 228 IPR032675 -
Vvi8g1438 806 SUPERFAMILY Protein kinase-like (PK-like) 514 803 IPR011009 -
Vvi8g1438 806 ProSiteProfiles Protein kinase domain profile. 525 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1438 806 PRINTS Leucine-rich repeat signature 328 341 - -
Vvi8g1438 806 PRINTS Leucine-rich repeat signature 422 435 - -
Vvi8g1438 806 SMART LRR_typ_2 133 156 IPR003591 -
Vvi8g1438 806 SMART LRR_typ_2 181 205 IPR003591 -
Vvi8g1438 806 SMART LRR_typ_2 422 445 IPR003591 -
Vvi8g1438 806 SMART LRR_typ_2 301 325 IPR003591 -
Vvi8g1438 806 SMART LRR_typ_2 85 108 IPR003591 -
Vvi8g1438 806 SMART LRR_typ_2 206 229 IPR003591 -
Vvi8g1438 806 SMART LRR_typ_2 109 132 IPR003591 -
Vvi8g1438 806 ProSitePatterns Tyrosine protein kinases specific active-site signature. 648 660 IPR008266 GO:0004672|GO:0006468
Vvi8g1438 806 SUPERFAMILY L domain-like 41 288 - -
Vvi8g1438 806 SUPERFAMILY L domain-like 230 489 - -
Vvi8g1438 806 Gene3D Phosphorylase Kinase; domain 1 494 603 - -
Vvi8g1438 806 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Vvi8g1438 806 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Vvi8g1438 806 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Vvi8g1438 806 ProSiteProfiles Leucine-rich repeat profile. 135 158 IPR001611 GO:0005515
Vvi8g1438 806 Pfam Protein kinase domain 527 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76795 PF00069 Pkinase 6.30E-28 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1438 - - vvi:100258928 1410.59