Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1449 ATGGCTTCGTCTTCGTCTGAACCTGGTTTGAAACCTGAGAGTGGCGGTGGTAGTGGTAGTGGTGGAGGAGAAACTTCCGAGGCAGCAGTGGCGAGTGATCAACTCTTGCTGTACAGAGGATTGAAAAAAGCTAAAAAAGAGCGAGGGAGTACTGCCAAAGAGAGGATCAGCAAAATGCCTCCTTGTGCCGCCGGGAAACGCAGCTCTATTTATAGAGGAGTTACCAGGCATAGATGGACTGGTCGTTATGAAGCCCATCTTTGGGATAAAAGTACCTGGAACCAAAATCAAAATAAGAAGGGAAAGCAAGGTATATTTTTGTGTGCATATGATGATGAGGAGGCTGCAGCTAGAGCGTATGATCTTGCTGCTTTAAAATACTGGGGCCCAGGGACGCTCATTAATTTTCCGGTTACAGATTATGCTAGAGATCTTGAAGAGATGCAAAATGTCTCAAGAGAAGAATACCTTGCATCTCTCCGAAGAAAGAGCAGTGGTTTCTCAAGAGGAATATCTAAATATCGTGGGCTTGCCAGTAATCGGTGGGATCAACCATTTGGACGTATAGCCGGACAAGAATACTTCAATAACATGCACTATGGTATGGGTGATGATGCAGCAGCGGAAAGTGAATTGTTTGGTGGTTTTTGCATGGAAAGAAAAATTGATCTAACAGGTTATATTAAGTGGTGGGGGCCCAACAAAACTCGCCAATCAGATTCCCTCGCAAAATCATCAGAGGAAACAAAGCAAGGCAGTGGGGAAGATATTGGCAGTGAACTTAAAACATTGGAATGGGCAATCCAGCCTACTGAGCCATATCAGATGCCCCGTTTGGGCCTTCCCCATGAAGGGAAAAAGCAAAAAAGTTCCACTGTATCGGCCTTGAGCATTTTGTCACGGTCTGCTGCCTACAAGAGTTTGGAAGAGAAAGCATCCAAAAAGCAAGAAAATAACACTGAGAATGATGAGAATGAGAATAAAAATAAAATCAACAAGATGGATCATGGAAAAGCAGTTGAGAAATCAACAAGCCATGATAGTGGAAGTGAGAGACTTGGAGTAGCATTAGGATTGGGTGGGGAATTCTCTATTCAAAGAAGTGTGTATCCATTGACTCCTTTGTTATCCGCACCACTTCTTACCAACTACAGTAGTGTTGATCCCTTGGCGGACCCTATTTTATGGACGTCTCTTGTTCCTGCTCTGCCGACTGGACTTCCACGTACTGCTGAGGTTACAAAGACTGAGACCAGTTCAACTTATACCTTCTTTCATCAGGAGGAACAATGA 1293 44.08 MASSSSEPGLKPESGGGSGSGGGETSEAAVASDQLLLYRGLKKAKKERGSTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGIFLCAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLASNRWDQPFGRIAGQEYFNNMHYGMGDDAAAESELFGGFCMERKIDLTGYIKWWGPNKTRQSDSLAKSSEETKQGSGEDIGSELKTLEWAIQPTEPYQMPRLGLPHEGKKQKSSTVSALSILSRSAAYKSLEEKASKKQENNTENDENENKNKINKMDHGKAVEKSTSHDSGSERLGVALGLGGEFSIQRSVYPLTPLLSAPLLTNYSSVDPLADPILWTSLVPALPTGLPRTAEVTKTETSSTYTFFHQEEQ* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21956910 21961543 - Vvi8g1449 Vvi8g1449 791672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1449 430 PANTHER BNAA03G19580D PROTEIN 2 428 - -
Vvi8g1449 430 MobiDBLite consensus disorder prediction 275 294 - -
Vvi8g1449 430 Gene3D AP2/ERF domain 70 139 IPR036955 GO:0003700|GO:0006355
Vvi8g1449 430 MobiDBLite consensus disorder prediction 1 28 - -
Vvi8g1449 430 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 428 - -
Vvi8g1449 430 Pfam AP2 domain 70 129 IPR001471 GO:0003700|GO:0006355
Vvi8g1449 430 ProSiteProfiles AP2/ERF domain profile. 70 137 IPR001471 GO:0003700|GO:0006355
Vvi8g1449 430 SUPERFAMILY DNA-binding domain 69 138 IPR016177 GO:0003677
Vvi8g1449 430 MobiDBLite consensus disorder prediction 236 258 - -
Vvi8g1449 430 SMART rav1_2 70 143 IPR001471 GO:0003700|GO:0006355
Vvi8g1449 430 MobiDBLite consensus disorder prediction 309 351 - -
Vvi8g1449 430 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Vvi8g1449 430 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Vvi8g1449 430 MobiDBLite consensus disorder prediction 309 348 - -
Vvi8g1449 430 Coils Coil 305 328 - -
Vvi8g1449 430 MobiDBLite consensus disorder prediction 241 255 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15142 PF00847 AP2 1.30E-10 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1449 K09285 - vvi:100248718 776.548