Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1466 ATGGGGAGAGGCAAGATTGAAATCAAGAAGATTGAAAATATCAACAGCCGTCAAGTCACCTTCTCAAAGCGTCGTGCAGGTTTGCTTAAAAAGGCCAAAGAATTGTCTGTTTTATGTGATGCTGAAGTTGGTGTCATCATCTTCTCCAGCACAGGAAAGCTTTATGAGTTCTCTAGTTCAAGTATGGAGCACACTCTGACGAGATATGGGAGGGGGCTGGACTCGGAACTTCCTTCACTTCATCGGTCCGCAGAGTTTACTATACCGGTTGTTTTTACATTTGAACAGGAGTCCCAGCCTGAGGTCGCCTCTCTCAAAGAAGAAGTTGCAAAACTACAGAAGGGTTACCTGCGAATGATGGGGAAGGAACTGGATGGGTTAAGCTTCAAAGAGTTGCAGCACCTAGAGCATTTATTAAGTGAAGGGATACTATCTGTTAAAGACAAAAAGGAGCAGGTACTGTTGGAGCAGCTCAAGAAGTCCAGGATGCATGAACAAAGAGCTATGATGGAGAATGAGACCTTGAGAAAGCAGGTAAACCCCTAA 546 44.51 MGRGKIEIKKIENINSRQVTFSKRRAGLLKKAKELSVLCDAEVGVIIFSSTGKLYEFSSSSMEHTLTRYGRGLDSELPSLHRSAEFTIPVVFTFEQESQPEVASLKEEVAKLQKGYLRMMGKELDGLSFKELQHLEHLLSEGILSVKDKKEQVLLEQLKKSRMHEQRAMMENETLRKQVNP* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22162818 22165051 - Vvi8g1466 Vvi8g1466 791689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1466 181 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vvi8g1466 181 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Vvi8g1466 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi8g1466 181 ProSiteProfiles K-box domain profile. 95 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi8g1466 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 164 - -
Vvi8g1466 181 Pfam K-box region 95 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi8g1466 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi8g1466 181 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Vvi8g1466 181 PANTHER - 1 164 - -
Vvi8g1466 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi8g1466 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi8g1466 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi8g1466 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi8g1466 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15144 PF01486 K-box 3.50E-17 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1466 - - vvi:100252077 298.901