Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g156 ATGAATGACCTTTTATCGGAATCTTTTGAGATCCCTCGGGGTCAAGCTTCTAGAGAGGGAGATATTGAATTAGGAGAACGTGCTCTACAAAATTCAGGGGAACTGGGATTGGAAAATTTCTTCAAGAAGGTTCAGGAGATTGAGAAACAAAATGACAAGCTGAACGTGCAACTCAAAAAACTCCAGGATGCACACGAGGAGTCAAAGGCTGTAACCAAGGCTGCTGCCATGAAAGCAATTAAAAAGCGAATGGAGAAAGATGTTGATGAAGTTGGAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAGAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATCGATCAAGAACTGCAACAACTGTTGCCTTGAAAAAGAAGTTCAAAGACAAGATGGCTGAATTTCAGGTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTGTTTTTACAGTGACTGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAAGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACATTGGCTGAAATTCAAGAGCGACATGATGCAGTTAGAGAAGTAGAGAGGAAGCTTCTTGATCTACAGCAGATATTCTTAGATATGGCGGTGTTGGTAGATGCACAGGGGGACATGCTTGACAATATAGAATCACAGGTGTCTAGTGCAGTAGACCATGTGCAGTCGGGTAACACTGCCCTCCAAAGGGCCAAGAAGCTACAAAGGAGCTCGAGAAAATGGATGTGCATTGCCATCATCATCCTTCTTATCATTGTGGTGATCATAGTGGTGGCAGTGCTCAAGCCTTGGAGCAAGAATGGTGCTTAG 924 43.4 MNDLLSESFEIPRGQASREGDIELGERALQNSGELGLENFFKKVQEIEKQNDKLNVQLKKLQDAHEESKAVTKAAAMKAIKKRMEKDVDEVGKIARSIKAKVEELDKENLANRQKPGCGKGTGVDRSRTATTVALKKKFKDKMAEFQVLRESIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVREVERKLLDLQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQRAKKLQRSSRKWMCIAIIILLIIVVIIVVAVLKPWSKNGA* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3553934 3577026 - Vvi8g156 Vvi8g156 790379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g156 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Vvi8g156 307 CDD SNARE_syntaxin1-like 206 268 - -
Vvi8g156 307 Gene3D - 198 300 - -
Vvi8g156 307 Gene3D - 34 161 - -
Vvi8g156 307 SMART tSNARE_6 202 269 IPR000727 -
Vvi8g156 307 SMART SynN_4 32 158 IPR006011 GO:0016020
Vvi8g156 307 CDD SynN 37 194 IPR006011 GO:0016020
Vvi8g156 307 Pfam SNARE domain 243 295 IPR000727 -
Vvi8g156 307 PANTHER - 3 299 - -
Vvi8g156 307 PANTHER SYNTAXIN 3 299 IPR045242 -
Vvi8g156 307 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Vvi8g156 307 Coils Coil 37 71 - -
Vvi8g156 307 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi8g156 307 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g156 K08486 - vvi:100265088 553.903