Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g18 ATGTTTTGGCAAAATAAGTTGAATCAGGAGTGCCCTTTCTGCACTGGGGAAAGGGTATTTTTTGACATAGGACATATTTATGTTTGTGTCATTGTTACCCAGTCTGGGGACGGAACCGACGCTTGGCAAGTTTTGTTCGTTTTAAAAAGGTTCATTATTATGTTTTTTTGGAGGGTTATGCCTAAGATGAAACACAAAGGCAAATTGCATAAACCCTATCTTAATTACTCTGTTATAGTCCACCTTGAGAAGGTCGGTGAAGGCACCTACGGCAAGGTTTACAAGGCCAAGGACAAAACCAGCGGCCAGGTGGTGGCTCTCAAGAAGACCCGCCTTGAAATGGACGAGGAAGGCGTCCCTCCCACCGCCCTCCGTGAGGTCTCCCTCCTCCAGATGCTCTCCCAGTCCCTCTACGTCGTCCGCCTCCTCTGCGTCGAGCACCTTGACAAGAACGGCAAGCCTTTTCTCTACTTGGTTTTCGAGTACCTTGATACTGATCTCAAGAAGTTCATCGATTCCCACCGCAAGCCTCCAAACCCTAGGCCGATGCCCCCCGCCCTCATCCAGAGTTTTCTCTACCAGCTCTGCAAGGGTGTTGCGCACTGCCACAGCCACGGCGTCCTTCACCGGGATTTGAAGCCTCAGAACTTGTTGGTGGATAAGGACAAGGGGATTCTCAAGATCGCCGATCTCGGCCTCGGGAGGGCCTTTACTGTTCCTCTCAAGAGCTACACTCATGAGATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGCTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGGTTGTTGGGAACGCCAACTGAGAAACAGTGGCCTGGAGTTAGTTCTCTGAGAGACTGGCATGTCTATCCACAGTGGGAACCTCAAAACTTGGCACGTGCTGTTCCATCATTGGGACCTGATGGTGTTGACCTTCTATCGAAGATGCTTAAATATGACCCATCTGAAAGAATCTCAGCTAAAGCAGCTTTGGATCATCCCTACTTCGACAGCCTTGACAAATCTCAATTCTGA 1137 48.9 MFWQNKLNQECPFCTGERVFFDIGHIYVCVIVTQSGDGTDAWQVLFVLKRFIIMFFWRVMPKMKHKGKLHKPYLNYSVIVHLEKVGEGTYGKVYKAKDKTSGQVVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYVVRLLCVEHLDKNGKPFLYLVFEYLDTDLKKFIDSHRKPPNPRPMPPALIQSFLYQLCKGVAHCHSHGVLHRDLKPQNLLVDKDKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLARAVPSLGPDGVDLLSKMLKYDPSERISAKAALDHPYFDSLDKSQF* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 333860 338863 + Vvi8g18 Vvi8g18 790241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g18 378 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Vvi8g18 378 Gene3D Phosphorylase Kinase; domain 1 78 164 - -
Vvi8g18 378 PANTHER CELL DIVISION PROTEIN KINASE 81 378 - -
Vvi8g18 378 ProSiteProfiles Protein kinase domain profile. 79 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g18 378 SMART serkin_6 79 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g18 378 PANTHER CYCLIN-DEPENDENT KINASE B1-2 81 378 - -
Vvi8g18 378 SUPERFAMILY Protein kinase-like (PK-like) 81 373 IPR011009 -
Vvi8g18 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vvi8g18 378 Gene3D Transferase(Phosphotransferase) domain 1 166 377 - -
Vvi8g18 378 Pfam Protein kinase domain 81 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g904 Vvi8g18 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76797 PF00069 Pkinase 7.90E-66 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g18 K07760 - vvi:100262151 598.201