Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g217 | ATGTCTCTGGATATCGCTTCTGAACGTGTTTGTTATGTGCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTCCCGTGCACCAGTGTGTTCAATGCTGTGACCATTAGGTGTGGCCACTGTGCTAATCTTTTGTCAGTGAACATGGGAGCTTTGCTACAGACTGTCCCTCTTCATGATCTTCAGAAGGAGAACCTACTTTTCCAAGCCTCTAGCAAGGAGTGCGGATCTTCTTCCAAATTCCACAAGGTTGCTGCAATGGATTCTTCAGATAATGAGCAACCTAGAATGCTTCCAAAAGGTGCAGCACAAGAGAAAAAGCAAAGGGTCCCATCAGCATACAACAGGTTTATTAAGGAGGAGATTCAAAGGATAAAAGCTAATAATCCTGACATAAGCCATAAGGAAGCCTTTAGTACTGCAGCAAAAAATTGGGCGCATTTCCCTCATATCCACTTTGGGCTAACGCTGAACAACAGCAAGAGCGACAAAGCTAACTTTGATGAAGCATTTTCTGGGGAAGGGCCAAGAAAGACCCAAGGATTCTACTAA | 555 | 44.32 | MSLDIASERVCYVHCNFCNTILAVSVPCTSVFNAVTIRCGHCANLLSVNMGALLQTVPLHDLQKENLLFQASSKECGSSSKFHKVAAMDSSDNEQPRMLPKGAAQEKKQRVPSAYNRFIKEEIQRIKANNPDISHKEAFSTAAKNWAHFPHIHFGLTLNNSKSDKANFDEAFSGEGPRKTQGFY* | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5502499 | 5509539 | + | Vvi8g217 | Vvi8g217 | 790440 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g217 | 184 | Gene3D | High mobility group box domain | 103 | 175 | IPR036910 | - | |
Vvi8g217 | 184 | CDD | HMGB-UBF_HMG-box | 110 | 146 | - | - | |
Vvi8g217 | 184 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 184 | IPR006780 | GO:0007275 | |
Vvi8g217 | 184 | SUPERFAMILY | HMG-box | 105 | 149 | IPR036910 | - | |
Vvi8g217 | 184 | Pfam | YABBY protein | 6 | 156 | IPR006780 | GO:0007275 | |
Vvi8g217 | 184 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
Vvi8g217 | 184 | PANTHER | AXIAL REGULATOR YABBY 2-RELATED | 1 | 184 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15148 | PF04690 | YABBY | 7.10E-69 | CL0114 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g217 | K25796 | - | vvi:100267536 | 379.407 |