Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g217 ATGTCTCTGGATATCGCTTCTGAACGTGTTTGTTATGTGCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTCCCGTGCACCAGTGTGTTCAATGCTGTGACCATTAGGTGTGGCCACTGTGCTAATCTTTTGTCAGTGAACATGGGAGCTTTGCTACAGACTGTCCCTCTTCATGATCTTCAGAAGGAGAACCTACTTTTCCAAGCCTCTAGCAAGGAGTGCGGATCTTCTTCCAAATTCCACAAGGTTGCTGCAATGGATTCTTCAGATAATGAGCAACCTAGAATGCTTCCAAAAGGTGCAGCACAAGAGAAAAAGCAAAGGGTCCCATCAGCATACAACAGGTTTATTAAGGAGGAGATTCAAAGGATAAAAGCTAATAATCCTGACATAAGCCATAAGGAAGCCTTTAGTACTGCAGCAAAAAATTGGGCGCATTTCCCTCATATCCACTTTGGGCTAACGCTGAACAACAGCAAGAGCGACAAAGCTAACTTTGATGAAGCATTTTCTGGGGAAGGGCCAAGAAAGACCCAAGGATTCTACTAA 555 44.32 MSLDIASERVCYVHCNFCNTILAVSVPCTSVFNAVTIRCGHCANLLSVNMGALLQTVPLHDLQKENLLFQASSKECGSSSKFHKVAAMDSSDNEQPRMLPKGAAQEKKQRVPSAYNRFIKEEIQRIKANNPDISHKEAFSTAAKNWAHFPHIHFGLTLNNSKSDKANFDEAFSGEGPRKTQGFY* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5502499 5509539 + Vvi8g217 Vvi8g217 790440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g217 184 Gene3D High mobility group box domain 103 175 IPR036910 -
Vvi8g217 184 CDD HMGB-UBF_HMG-box 110 146 - -
Vvi8g217 184 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
Vvi8g217 184 SUPERFAMILY HMG-box 105 149 IPR036910 -
Vvi8g217 184 Pfam YABBY protein 6 156 IPR006780 GO:0007275
Vvi8g217 184 MobiDBLite consensus disorder prediction 89 110 - -
Vvi8g217 184 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 184 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g841 Vvi8g217 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15148 PF04690 YABBY 7.10E-69 CL0114 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g217 K25796 - vvi:100267536 379.407