Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g235 ATGGAAGAAATCGATGTTCCTCCATTTTTCCTCTGCCCGATTTCTTTGGAGATTATGAAAGATCCGGTGACGGTGTCAACGGGTATAACGTACGATCGGGAGAGCATCGAGAAGTGGTTGTTTTCGGGCAAAAATAACACCTGTCCGGCGACGAAGCAGGTTCTGTCGGCGGACTCCGATCTGACTCCCAACCACACTCTCCGGCGGCTGATTCAGGCGTGGTGCACTCTCAATGCTTCAAACGGTTCTCCACAGTTGCAGATGAAATGTATCGGAAAACTTCGAGCCCTTGCGACTGAGAGCGACGCCAACAAGCGGTGCATTGAGTCCGCCGCTCTAAGTATTCTCCATTATCTCCTACTGTCAGAAGCCGGGCTCAAGAAGCTTGTGGGAAAAAATGGTGAATTTGTGGGTTGCTTGGTACGAGTACTACAACGAGGAAACTACGAGTCTCGAGCTTATGCTGTAATGCTATTGAGTTCGATGCTCCAAGTTGCTGATCCAATACAATTAATCGCCTTGAAACCCGAATTCTTCGTGGAAGCAGTGCAAGTTTTGCAGGATCATATATCTCACCAGGCCACAAAAGCTACACTCAAACTACTAATTGAGGTTTGTCCATGGGGGAGAAACAAGGTCAAAGCAGTGGAAGCCGGCGCAGTTTCGATATTGACAGAGCTTCTTCTCGCTTCTTCAGAAAAAAGGGCTTGTGAGATGATCCTAACGGTGTTGGATCAGCTATGCGGGTGCGCGGAAGGAAGAGCCGAACTGTTGAAGCATGCAGCCGGGATGGCTATAGTGTCAAAGAAGATACTGAGGGTTTCTCACGTGGCAAGTGAACGGGCAGTGAGAATTCTGTATTCCATTTCCAAGTTCTCTGCAACTCCAAGTGTTCTTCAAGAGATGTCGCAGCTGGGTGTGGTGGCGAAATTGTGTTTGGTGCTTCAATTGGCATGTACGAACTCAATATTGAAGGAAGGCTACCTCCCTAAAGCACTAAAAAGGCACAACCATTAA 1017 48.08 MEEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPATKQVLSADSDLTPNHTLRRLIQAWCTLNASNGSPQLQMKCIGKLRALATESDANKRCIESAALSILHYLLLSEAGLKKLVGKNGEFVGCLVRVLQRGNYESRAYAVMLLSSMLQVADPIQLIALKPEFFVEAVQVLQDHISHQATKATLKLLIEVCPWGRNKVKAVEAGAVSILTELLLASSEKRACEMILTVLDQLCGCAEGRAELLKHAAGMAIVSKKILRVSHVASERAVRILYSISKFSATPSVLQEMSQLGVVAKLCLVLQLACTNSILKEGYLPKALKRHNH* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7116833 7124579 - Vvi8g235 Vvi8g235 790458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g235 338 Gene3D - 106 327 IPR011989 -
Vvi8g235 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vvi8g235 338 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vvi8g235 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 82 - -
Vvi8g235 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 111 322 - -
Vvi8g235 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 83 111 - -
Vvi8g235 338 SUPERFAMILY ARM repeat 70 321 IPR016024 -
Vvi8g235 338 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Vvi8g235 338 PANTHER WDSAM1 PROTEIN 83 111 IPR045185 GO:0061630
Vvi8g235 338 PANTHER WDSAM1 PROTEIN 111 322 IPR045185 GO:0061630
Vvi8g235 338 PANTHER WDSAM1 PROTEIN 1 82 IPR045185 GO:0061630
Vvi8g235 338 SUPERFAMILY RING/U-box 3 77 - -
Vvi8g235 338 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vvi8g235 338 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g235 - - - vvi:100250551 587.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g767 Vvi8g235 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g235 . . . . Bpe04g01488 . Bma04g01537 . . . . . . . . . Cpe08g00965 . . . . . . . . . . . . . . . . . . . . . Cme04g02322 . . Bda03g01627 Bda05g01129 . . . . . . . . . . . . . . . . . . . . Cla10g01740 Cam10g1792 Cec10g1844 Cco10g1817 Clacu10g1808 Cmu10g2558 Cre10g1945 Lsi03g01816 . Chy04g01856 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001728 2 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 3 2 2 2 2 3 67