Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g235 ATGGAAGAAATCGATGTTCCTCCATTTTTCCTCTGCCCGATTTCTTTGGAGATTATGAAAGATCCGGTGACGGTGTCAACGGGTATAACGTACGATCGGGAGAGCATCGAGAAGTGGTTGTTTTCGGGCAAAAATAACACCTGTCCGGCGACGAAGCAGGTTCTGTCGGCGGACTCCGATCTGACTCCCAACCACACTCTCCGGCGGCTGATTCAGGCGTGGTGCACTCTCAATGCTTCAAACGGTTCTCCACAGTTGCAGATGAAATGTATCGGAAAACTTCGAGCCCTTGCGACTGAGAGCGACGCCAACAAGCGGTGCATTGAGTCCGCCGCTCTAAGTATTCTCCATTATCTCCTACTGTCAGAAGCCGGGCTCAAGAAGCTTGTGGGAAAAAATGGTGAATTTGTGGGTTGCTTGGTACGAGTACTACAACGAGGAAACTACGAGTCTCGAGCTTATGCTGTAATGCTATTGAGTTCGATGCTCCAAGTTGCTGATCCAATACAATTAATCGCCTTGAAACCCGAATTCTTCGTGGAAGCAGTGCAAGTTTTGCAGGATCATATATCTCACCAGGCCACAAAAGCTACACTCAAACTACTAATTGAGGTTTGTCCATGGGGGAGAAACAAGGTCAAAGCAGTGGAAGCCGGCGCAGTTTCGATATTGACAGAGCTTCTTCTCGCTTCTTCAGAAAAAAGGGCTTGTGAGATGATCCTAACGGTGTTGGATCAGCTATGCGGGTGCGCGGAAGGAAGAGCCGAACTGTTGAAGCATGCAGCCGGGATGGCTATAGTGTCAAAGAAGATACTGAGGGTTTCTCACGTGGCAAGTGAACGGGCAGTGAGAATTCTGTATTCCATTTCCAAGTTCTCTGCAACTCCAAGTGTTCTTCAAGAGATGTCGCAGCTGGGTGTGGTGGCGAAATTGTGTTTGGTGCTTCAATTGGCATGTACGAACTCAATATTGAAGGAAGGCTACCTCCCTAAAGCACTAAAAAGGCACAACCATTAA 1017 48.08 MEEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPATKQVLSADSDLTPNHTLRRLIQAWCTLNASNGSPQLQMKCIGKLRALATESDANKRCIESAALSILHYLLLSEAGLKKLVGKNGEFVGCLVRVLQRGNYESRAYAVMLLSSMLQVADPIQLIALKPEFFVEAVQVLQDHISHQATKATLKLLIEVCPWGRNKVKAVEAGAVSILTELLLASSEKRACEMILTVLDQLCGCAEGRAELLKHAAGMAIVSKKILRVSHVASERAVRILYSISKFSATPSVLQEMSQLGVVAKLCLVLQLACTNSILKEGYLPKALKRHNH* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7116833 7124579 - Vvi8g235 Vvi8g235 790458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g235 338 Gene3D - 106 327 IPR011989 -
Vvi8g235 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vvi8g235 338 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vvi8g235 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 82 - -
Vvi8g235 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 111 322 - -
Vvi8g235 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 83 111 - -
Vvi8g235 338 SUPERFAMILY ARM repeat 70 321 IPR016024 -
Vvi8g235 338 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Vvi8g235 338 PANTHER WDSAM1 PROTEIN 83 111 IPR045185 GO:0061630
Vvi8g235 338 PANTHER WDSAM1 PROTEIN 111 322 IPR045185 GO:0061630
Vvi8g235 338 PANTHER WDSAM1 PROTEIN 1 82 IPR045185 GO:0061630
Vvi8g235 338 SUPERFAMILY RING/U-box 3 77 - -
Vvi8g235 338 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vvi8g235 338 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g767 Vvi8g235 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g235 - - vvi:100250551 587.03