Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g238 ATGAAATGGTATAACAATGTAAAGTTGGCGTGTGTAATTTTTTATAATTTGGTAGTAGGTTTAGTGAAAGGGATCCCAAAGAGAGAGGTGGGTGTGCGGTGTTTGTGTTATGTTTTCATTGCCGATGATGATGAAGCACGTGCACACTCAGATTTCCATCACACCAGGATTTGCCTGATAAGACCCTTGCAGTTGTTGCTTCACAATTCCGAACCAGTTGATTCAGGCAGCAAATGGGTTGATTCTCACACCCAGATTTATCACTCCAGTGATATAAACTCCAAGAAAGAGGAAATATTATTCAAAATCGATGGCGACTCCTCCATCCGGTCTCTCCCTAAGCCTCTCTTCGCAACAACCGCCGGCCTATGCGACGACATGCGAATTTCGGGGGCGTCATCGTCGTCGGCGTCGGGAATTTCAAACGGAGTTTCGGGTATGCATGGTGTGATACTGAGTTCCAAGTACTTGAAAGCTGCTCAGCAACTACTGGACGAGGTTGTGAACGTGGGAAATGGAATTAAAACCGAAACACCATCTAAGAAGAGCAGCAGTGAGGCAACCAAGACTCTTGGGGAAGGCCTAATTGGAGGAGAAACAAGCACCAAACGCAGCGCCGACCTTTCAACTGCTGAGAGGCAAGAGATTCAGATGAAGAAAGCTAAGCTCCTCAACATGCTTGATGAGGTGGAGCAAAGATACCGGCAGTATCATCATCAGATGCAGATTGTGATTTCTTCATTCGAGCAAGCGGCAGGGATCGGGTCCGCCAAAACTTACACAGCCCTTGCGCTGCAGACCATCTCAAAGCAATTCAGATGTCTGAAAGACGCAATATCGGGGCAGATTCGAGCGGCAAACAAGAGTTTAGGGGAGGAAGATGGCACTGGAGGGAAGATTGAGGGTTCAAGACTCAAATTTGTTGATCATCAGCTTCGTCAGCAGCGGGCTCTTCAACAATTGGGAATGATCCAACAGAATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAGGTGTCTAACTGGTTCATAAATGCTCGGGTTCGTCTCTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAAGTCAAGGACCACGAAGAGAATGGATCAGGGGAGAAAACAAGCAAGAGCGAGGACAACAACCTGGAAGATTCATTTCAAATCCAAACCAGACAATCCCACGAACAAGAGTGCTCCTCCAGTGATCTCAATGGCCACAGCTGCAACATCTCCCATTGGAGGAGGAAATGCCCGGAACCAGCCCAGGTTCACGCTCATGGGGCCATCAGAAATGGAAGGGATGGCCCAAGGAAGTCCAAAGAAACCAAGGAGCACCGATGTCCTGCACTCCCCATCTAG 1470 48.3 MKWYNNVKLACVIFYNLVVGLVKGIPKREVGVRCLCYVFIADDDEARAHSDFHHTRICLIRPLQLLLHNSEPVDSGSKWVDSHTQIYHSSDINSKKEEILFKIDGDSSIRSLPKPLFATTAGLCDDMRISGASSSSASGISNGVSGMHGVILSSKYLKAAQQLLDEVVNVGNGIKTETPSKKSSSEATKTLGEGLIGGETSTKRSADLSTAERQEIQMKKAKLLNMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAISGQIRAANKSLGEEDGTGGKIEGSRLKFVDHQLRQQRALQQLGMIQQNVWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKDHEENGSGEKTSKSEDNNLEDSFQIQTRQSHEQECSSSDLNGHSCNISHWRRKCPEPAQVHAHGAIRNGRDGPRKSKETKEHRCPALPI* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7222569 7227039 - Vvi8g238 Vvi8g238 790461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g238 489 CDD homeodomain 329 390 IPR001356 GO:0003677
Vvi8g238 489 ProSiteProfiles 'Homeobox' domain profile. 326 389 IPR001356 GO:0003677
Vvi8g238 489 SMART HOX_1 329 393 IPR001356 GO:0003677
Vvi8g238 489 MobiDBLite consensus disorder prediction 399 418 - -
Vvi8g238 489 Coils Coil 213 240 - -
Vvi8g238 489 MobiDBLite consensus disorder prediction 467 489 - -
Vvi8g238 489 SUPERFAMILY Homeodomain-like 331 396 IPR009057 -
Vvi8g238 489 SMART prehox3 145 281 IPR006563 -
Vvi8g238 489 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 123 439 - -
Vvi8g238 489 MobiDBLite consensus disorder prediction 399 417 - -
Vvi8g238 489 Pfam Homeobox KN domain 346 385 IPR008422 GO:0003677|GO:0006355
Vvi8g238 489 MobiDBLite consensus disorder prediction 456 489 - -
Vvi8g238 489 Pfam Associated with HOX 150 280 IPR006563 -
Vvi8g238 489 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 123 439 - -
Vvi8g238 489 MobiDBLite consensus disorder prediction 175 207 - -
Vvi8g238 489 Gene3D - 332 410 - -
Vvi8g238 489 MobiDBLite consensus disorder prediction 175 190 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15152 PF07526 POX 2.40E-50 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g238 - - vvi:100255734 562.377