Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g250 ATGGCTTCTATTTCTTCGAGTCCGAGGACTGTAGAGGAGATCTTCAAGGATTACAGCGGTCGTAGAGCTGGTGTTGTGCGTGCCTTAACCTACGATGTTGATGAATTCTACAAGCTCTGCGATCCAGAGAAAGAGAATTTGTGTCTGTATGGTCATCCAAATGATACTTGGGAAGTAACTCTTCCAGCAGAGGAAGTTCCTCCAGAGCTCCCTGAGCCAGCGCTTGGGATCAATTTTGCGAGAGATGGCATGAACCGCAAAGACTGGCTTTCACTGGTTGCTGTGCACAGTGATTCTTGGTTGCTCTCTGCAGCTTTCTATCTTGGTGCTCGCCTTAACCGCAATGAAAGGAAACGTCTATTTAGTATGATCAATGATCTGCCCACTGTCTTTGAAGTTGTAACAGAGAGGAAGCCTATAAAAGACAAGCCTAGTGTGGATAGTGGAAGCAAATCTCGAGTCAGCACAAAGAGGGGGAATGAAGGGCAAGTGAAAAGCACCCCGAAGCTGGCAGCAGATGAGAGCTTTGAGGAGGAGGAAGATGAACATAGTGAAACCCTCTGTGGGAGCTGTGGTGGGAACTACAATGCTGATGAGTTCTGGATTGGGTGCGACATCTGTGAGAGGTGGTTCCATGGAAAGTGTGTGAAGATAACACCTGCCAAGGCTGAGAGCATTAAGCAATATAAGTGTCCATCTTGCAGCTTAAAGAGGAGCAGGCAGTAG 726 47.52 MASISSSPRTVEEIFKDYSGRRAGVVRALTYDVDEFYKLCDPEKENLCLYGHPNDTWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSAAFYLGARLNRNERKRLFSMINDLPTVFEVVTERKPIKDKPSVDSGSKSRVSTKRGNEGQVKSTPKLAADESFEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKRSRQ* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7561713 7570372 + Vvi8g250 Vvi8g250 790473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g250 241 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 240 - -
Vvi8g250 241 MobiDBLite consensus disorder prediction 141 176 - -
Vvi8g250 241 MobiDBLite consensus disorder prediction 149 163 - -
Vvi8g250 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Vvi8g250 241 PANTHER CPG BINDING PROTEIN 2 240 IPR045104 GO:0006355|GO:0042393
Vvi8g250 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 235 IPR013083 -
Vvi8g250 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Vvi8g250 241 CDD PHD_AL_plant 187 237 IPR044104 -
Vvi8g250 241 Pfam PHD-finger 188 235 IPR019787 -
Vvi8g250 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Vvi8g250 241 SMART PHD_3 187 235 IPR001965 -
Vvi8g250 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g250 Vvi13g55 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15153 PF12165 Alfin 1.10E-68 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g250 - - vvi:100259069 486.108